Miyakogusa Predicted Gene

Lj6g3v2006420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2006420.1 tr|A9SHW2|A9SHW2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_79634
,50.52,6e-18,OPA3,Optic atrophy 3-like; SUBFAMILY NOT NAMED,NULL;
OPTIC ATROPHY 3 PROTEIN (OPA3),Optic atrophy 3-,CUFF.60463.1
         (169 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g07930.1                                                       265   2e-71
Glyma06g43900.1                                                       207   5e-54
Glyma06g43900.2                                                       121   3e-28
Glyma12g14010.1                                                       118   3e-27

>Glyma10g07930.1 
          Length = 169

 Score =  265 bits (676), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/153 (84%), Positives = 143/153 (93%)

Query: 17  SKPVASRLKQQAALHPRFRQLIINMAQANHQVSTKMQRRIYGHATDVEIRPLNEEKAVQA 76
           SKPVASRLKQQAALHPRFR+LI+ MAQ+NHQ++TKMQRRIYGHATDVEIRPLNEEKAVQA
Sbjct: 17  SKPVASRLKQQAALHPRFRELIVRMAQSNHQITTKMQRRIYGHATDVEIRPLNEEKAVQA 76

Query: 77  AVDLIGELFVFSVAGVLVVFEVQRSARSEARKEEIRKQELGAMKQKSEDLAQEVELLKHR 136
           AVDLIGELFVFSVAGVL++FEVQRSARSEARKEE RKQEL  +KQK+E+LA+EVELLKHR
Sbjct: 77  AVDLIGELFVFSVAGVLLIFEVQRSARSEARKEEQRKQELQDVKQKNENLAEEVELLKHR 136

Query: 137 LQEIEQMARGRGLAGVLNFRQGNTENAKTEKPA 169
           +QE+EQMARGRGL G+LNFR GNTE  K EK A
Sbjct: 137 IQELEQMARGRGLIGILNFRNGNTEIGKAEKTA 169


>Glyma06g43900.1 
          Length = 168

 Score =  207 bits (527), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 94/141 (66%), Positives = 123/141 (87%)

Query: 17  SKPVASRLKQQAALHPRFRQLIINMAQANHQVSTKMQRRIYGHATDVEIRPLNEEKAVQA 76
            KP+A+RLK++A  HP+FR  II++AQANH+++T++QRRIYGHATDV I PLNEEKAVQA
Sbjct: 18  CKPIANRLKKEAGYHPKFRNFIISIAQANHRLTTRVQRRIYGHATDVAIHPLNEEKAVQA 77

Query: 77  AVDLIGELFVFSVAGVLVVFEVQRSARSEARKEEIRKQELGAMKQKSEDLAQEVELLKHR 136
           A DL+GELFVFSVAG  ++FEVQRS+RSEARKEE+R+QE+  +K K+E+LA+E+ELL  +
Sbjct: 78  AADLLGELFVFSVAGAAIIFEVQRSSRSEARKEELRRQEIQEIKTKNEELAREIELLAQK 137

Query: 137 LQEIEQMARGRGLAGVLNFRQ 157
           L+E+EQ++RGRGL G LNFR 
Sbjct: 138 LEELEQLSRGRGLLGTLNFRH 158


>Glyma06g43900.2 
          Length = 144

 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 82/119 (68%), Gaps = 10/119 (8%)

Query: 17  SKPVASRLKQQAALHPRFRQLIINMAQANHQVSTKMQRRIYGHATDVEIRPLNEEKAVQA 76
            KP+A+RLK++A  HP+FR  II++AQANH+++T++QRRIYGHATDV I PLNEEKAVQA
Sbjct: 18  CKPIANRLKKEAGYHPKFRNFIISIAQANHRLTTRVQRRIYGHATDVAIHPLNEEKAVQA 77

Query: 77  AVDLIGELFVFS----------VAGVLVVFEVQRSARSEARKEEIRKQELGAMKQKSED 125
           A DL+GELFVFS          VA +L    +Q   R +     +R +E+   KQ+ ++
Sbjct: 78  AADLLGELFVFSTNVADAILIAVADILKTLMLQPKTRLQELPSSLRCKEVQDQKQEKKN 136


>Glyma12g14010.1 
          Length = 89

 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 64/72 (88%)

Query: 17 SKPVASRLKQQAALHPRFRQLIINMAQANHQVSTKMQRRIYGHATDVEIRPLNEEKAVQA 76
           KP+A+RLK++A  HP+FR  II++AQANH+++T++QRRIY HATDV IRPLNEEKAVQA
Sbjct: 18 CKPIANRLKKEAGYHPKFRNFIISIAQANHRLTTRVQRRIYSHATDVAIRPLNEEKAVQA 77

Query: 77 AVDLIGELFVFS 88
          A DL+GELFVFS
Sbjct: 78 AADLLGELFVFS 89