Miyakogusa Predicted Gene

Lj6g3v1984420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1984420.1 tr|B9GJ67|B9GJ67_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_753597 PE=4
SV=1,28.05,6e-18,seg,NULL,CUFF.60387.1
         (601 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g29990.1                                                       173   4e-43
Glyma13g29980.2                                                        76   1e-13
Glyma13g29980.1                                                        76   1e-13

>Glyma13g29990.1 
          Length = 237

 Score =  173 bits (439), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/293 (41%), Positives = 154/293 (52%), Gaps = 79/293 (26%)

Query: 47  NQSKQVASLTTSRLSPLAEPFTLNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXECNMGSI 106
           NQSKQV SLTT+RLSPLA+PFTL                                N  ++
Sbjct: 5   NQSKQVNSLTTTRLSPLAKPFTL--------------------------------NRSTL 32

Query: 107 SKSHSVGDSVIPTLPLEIAEEKSIFEQHPSLELPSYGEFNGPLFDVSLPANSPSVTGLGY 166
               S                 S F  +P LE P   +F+G   D SLP+ SP    L +
Sbjct: 33  QPCSS-----------------SPFSGYPFLESPKEYDFDGFGEDFSLPSYSP----LCH 71

Query: 167 GIQLQGVDFHQGLFGKGNDDAGTSVADSDAGKFQKGKHAVDELTPSLTMSEGILEKNTGI 226
           G Q +G D H+ LF                    KGKHAVD ++P    S G     T  
Sbjct: 72  GKQGEG-DSHESLF-------------------HKGKHAVDGVSP-CPESAG-----TST 105

Query: 227 IVANDILSNSEGIVHTADEYSSFLISNCKVAPLKLSTTDMSSTKSTPQNHFSPILDDNDP 286
           IVA D+ SNS+G++H+A+E  S  +SN KV+PLKL  T++ S K+T QN  S  L ++D 
Sbjct: 106 IVAEDLPSNSKGLMHSANESISVPLSNFKVSPLKLPITELPSAKNTSQNQSSKNLGESDS 165

Query: 287 DVDSPCWKGTAAFSLPPSEISGSLQIQHIKKEAEKHNILNPLAPQFFPGIGYI 339
           DVDSPCWKGT AF L P E SGS+QI +++K  EKHN LNPLAPQFFPGIGY+
Sbjct: 166 DVDSPCWKGTMAFCLTPIENSGSIQISNVEKATEKHNSLNPLAPQFFPGIGYL 218


>Glyma13g29980.2 
          Length = 175

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 42/58 (72%)

Query: 510 VDGTESYDEHDPDVIMIPQIINNLNGFSTKKCGQRISTLDSTPADSTFCPDRLLELPK 567
           +DG +S  EH  D IMI QIINNLN FSTK+CG RI TLDSTP D+ F PDR LE  K
Sbjct: 1   MDGVDSNSEHGHDEIMIQQIINNLNDFSTKRCGLRIPTLDSTPTDNPFGPDRSLEGSK 58


>Glyma13g29980.1 
          Length = 177

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 42/58 (72%)

Query: 510 VDGTESYDEHDPDVIMIPQIINNLNGFSTKKCGQRISTLDSTPADSTFCPDRLLELPK 567
           +DG +S  EH  D IMI QIINNLN FSTK+CG RI TLDSTP D+ F PDR LE  K
Sbjct: 1   MDGVDSNSEHGHDEIMIQQIINNLNDFSTKRCGLRIPTLDSTPTDNPFGPDRSLEGSK 58