Miyakogusa Predicted Gene

Lj6g3v1952790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1952790.1 tr|G7ZUW7|G7ZUW7_MEDTR CCR4-associated factor
OS=Medicago truncatula GN=MTR_013s0010 PE=4 SV=1,71.74,0.0000000005,no
description,NULL; seg,NULL,CUFF.60292.1
         (127 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g38460.1                                                        67   6e-12
Glyma03g35800.1                                                        62   1e-10
Glyma10g09300.1                                                        54   4e-08
Glyma11g18460.1                                                        48   2e-06
Glyma12g31300.1                                                        47   3e-06

>Glyma19g38460.1 
          Length = 274

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 46/62 (74%), Gaps = 2/62 (3%)

Query: 67  IHMG-NKVKYWMPRRLLLGRSHQVGSDSLLILHAFKKIMEVYFGNKDDGLVKYDGVLHGL 125
           +H G N+V   +    +LG+SHQ GSDSLL LHAF+ I E+YFG K DGLV+Y GVL+GL
Sbjct: 213 LHGGLNRVCQSLKVERVLGKSHQAGSDSLLTLHAFQNIREIYFG-KADGLVQYAGVLYGL 271

Query: 126 EV 127
           +V
Sbjct: 272 DV 273


>Glyma03g35800.1 
          Length = 274

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 38/46 (82%), Gaps = 1/46 (2%)

Query: 82  LLGRSHQVGSDSLLILHAFKKIMEVYFGNKDDGLVKYDGVLHGLEV 127
           ++G+SHQ GSDSLL LHAF+ I E YF +K DGLV+Y GVL+GLEV
Sbjct: 229 VIGKSHQAGSDSLLTLHAFQNIRENYF-DKADGLVQYAGVLYGLEV 273


>Glyma10g09300.1 
          Length = 173

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 36/46 (78%), Gaps = 1/46 (2%)

Query: 83  LGRSHQVGSDSLLILHAFKKIMEVYFGNKD-DGLVKYDGVLHGLEV 127
           +G++HQ GSDSLL +H FKKI +VYF  ++ +G+VK+  VL+G E+
Sbjct: 127 VGKNHQSGSDSLLTMHIFKKIKDVYFAKENHNGMVKHASVLYGPEI 172


>Glyma11g18460.1 
          Length = 284

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)

Query: 83  LGRSHQVGSDSLLILHAFKKIMEVYFGNKDDGLVKYDGVLHGLEV 127
           +G+ HQ GSDSLL  HAF+KI+++YF    D   K+ GVL+GLEV
Sbjct: 240 VGKCHQAGSDSLLTWHAFQKIVDIYFVK--DEHRKHAGVLYGLEV 282


>Glyma12g31300.1 
          Length = 309

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 2/45 (4%)

Query: 83  LGRSHQVGSDSLLILHAFKKIMEVYFGNKDDGLVKYDGVLHGLEV 127
           +G+ HQ GSDSLL  HAF+K+ ++YF    DG  K+ GVL GLE+
Sbjct: 262 VGKCHQAGSDSLLTWHAFQKMRDIYFVT--DGPQKHAGVLFGLEL 304