Miyakogusa Predicted Gene
- Lj6g3v1946530.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1946530.1 Non Chatacterized Hit- tr|B9SKQ1|B9SKQ1_RICCO
Brca1 associated ring domain, putative OS=Ricinus
comm,43.21,0.0000000000002,ZF_RING_1,Zinc finger, RING-type, conserved
site; RING/U-box,NULL; zf-C3HC4_2,NULL; ZF_RING_2,Zinc f,CUFF.60262.1
(96 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma13g29220.1 167 2e-42
Glyma15g09870.1 125 8e-30
Glyma19g35010.2 77 3e-15
Glyma19g35010.1 77 3e-15
Glyma19g35010.3 77 4e-15
Glyma12g30540.1 58 2e-09
Glyma17g05390.1 54 3e-08
Glyma12g13270.2 50 7e-07
Glyma12g13270.1 50 8e-07
Glyma14g05430.1 48 2e-06
>Glyma13g29220.1
Length = 979
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/88 (87%), Positives = 81/88 (92%)
Query: 1 MGDLERMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCKIPFTRREVR 60
MGDLERM ELKCPIC SLLDSA+SLTCNHLFCNSCI KSMKSASACPVCKIPFTRREVR
Sbjct: 1 MGDLERMAIELKCPICWSLLDSAVSLTCNHLFCNSCIFKSMKSASACPVCKIPFTRREVR 60
Query: 61 PAPHMDNLVTIYKNMEAASGITMFVTQN 88
PAPHMDNLV+IY NMEA+SG+ FVTQN
Sbjct: 61 PAPHMDNLVSIYINMEASSGVNTFVTQN 88
>Glyma15g09870.1
Length = 950
Score = 125 bits (315), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 68/88 (77%), Gaps = 13/88 (14%)
Query: 1 MGDLERMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCKIPFTRREVR 60
MGDLERM REL CPIC++ L S+ L+SMKSASACPVCKIPFTRREVR
Sbjct: 1 MGDLERMARELICPICVAYLQSSF-------------LQSMKSASACPVCKIPFTRREVR 47
Query: 61 PAPHMDNLVTIYKNMEAASGITMFVTQN 88
PAPHMDNLV+IYKNMEAASG+ +F TQN
Sbjct: 48 PAPHMDNLVSIYKNMEAASGVNIFETQN 75
>Glyma19g35010.2
Length = 572
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%)
Query: 1 MGDLERMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCKIPFTRREVR 60
M +++ ELKCP+CLSL + L CNHLFCNSC+ + + C VCK + + +VR
Sbjct: 15 MLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCITAGPGCAVCKATYAQTDVR 74
Query: 61 PAPHMDNLVTIYKNMEAASGITMF 84
P ++N+V IY++++A ++F
Sbjct: 75 HVPFVENVVAIYRSLDATFCASLF 98
>Glyma19g35010.1
Length = 675
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%)
Query: 4 LERMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCKIPFTRREVRPAP 63
+++ ELKCP+CLSL + L CNHLFCNSC+ + + C VCK + + +VR P
Sbjct: 18 FQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCITAGPGCAVCKATYAQTDVRHVP 77
Query: 64 HMDNLVTIYKNMEAASGITMF 84
++N+V IY++++A ++F
Sbjct: 78 FVENVVAIYRSLDATFCASLF 98
>Glyma19g35010.3
Length = 660
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%)
Query: 4 LERMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCKIPFTRREVRPAP 63
+++ ELKCP+CLSL + L CNHLFCNSC+ + + C VCK + + +VR P
Sbjct: 18 FQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCITAGPGCAVCKATYAQTDVRHVP 77
Query: 64 HMDNLVTIYKNMEAASGITMF 84
++N+V IY++++A ++F
Sbjct: 78 FVENVVAIYRSLDATFCASLF 98
>Glyma12g30540.1
Length = 1001
Score = 58.2 bits (139), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 6 RMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASA--CPVCKIPFTRREVRPAP 63
R G + +CPICL + + A+ C H C C+L S ++A++ CPVC+ +R+++ AP
Sbjct: 759 RKGEQGECPICLEVFEDAVLTPCAHRLCRECLLSSWRNATSGLCPVCRKTISRQDLITAP 818
Query: 64 HMDNL-VTIYKNMEAASGITMFVTQ 87
+ V I KN + +T+ + +
Sbjct: 819 TENRFQVDIEKNWVESCKVTVLLNE 843
>Glyma17g05390.1
Length = 1009
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 6 RMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASA--CPVCKIPFTRREVRPAP 63
R G + +CPICL + + A+ C H C C+L S ++A++ CPVC+ +R ++ AP
Sbjct: 767 RKGEQGECPICLEVFEDAVLTPCAHRLCRECLLSSWRNATSGLCPVCRKTISRLDLITAP 826
Query: 64 HMDNL-VTIYKNMEAASGITMFVTQNNLPPIKSS 96
+ V I KN + +T+ + N L ++SS
Sbjct: 827 TENRFQVDIEKNWVESCKVTVLL--NELENLRSS 858
>Glyma12g13270.2
Length = 344
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 3 DLERMGRELKCPICLSLLDSAIS-LTCNHLFCNSCILKSMK-SASACPVCKIP-FTRREV 59
+L + +E++CPICL ++ + + C H FC CI KSM+ + CP C+ +RR +
Sbjct: 51 ELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSL 110
Query: 60 RPAPHMDNLV-TIYKNME 76
R P+ D L+ +Y N+E
Sbjct: 111 RDDPNYDALIAALYPNIE 128
>Glyma12g13270.1
Length = 433
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 3 DLERMGRELKCPICLSLLDSAIS-LTCNHLFCNSCILKSMK-SASACPVCKIP-FTRREV 59
+L + +E++CPICL ++ + + C H FC CI KSM+ + CP C+ +RR +
Sbjct: 51 ELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSL 110
Query: 60 RPAPHMDNLV-TIYKNME 76
R P+ D L+ +Y N+E
Sbjct: 111 RDDPNYDALIAALYPNIE 128
>Glyma14g05430.1
Length = 675
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 9 RELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCKIPFTRREVRPAPHMDNL 68
++ CPIC+ ++ A C H FC CI+ +++ S CP C T + P +D L
Sbjct: 46 KDFLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNTNLFPNFLLDKL 105
Query: 69 V 69
+
Sbjct: 106 L 106