Miyakogusa Predicted Gene
- Lj6g3v1946410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1946410.1 Non Chatacterized Hit- tr|H9V7M0|H9V7M0_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda GN=C,63.01,5e-18,no
description,NULL; F-box domain,F-box domain, cyclin-like;
F-box-like,NULL; seg,NULL; FAMILY NOT N,CUFF.60253.1
(384 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma15g09920.1 608 e-174
Glyma13g29140.2 608 e-174
Glyma13g29140.1 608 e-174
Glyma07g16880.1 198 7e-51
Glyma16g10050.1 157 2e-38
Glyma02g26690.1 153 4e-37
Glyma05g19270.1 93 4e-19
Glyma15g23630.1 58 2e-08
Glyma06g24700.1 56 5e-08
Glyma04g26010.1 50 5e-06
>Glyma15g09920.1
Length = 385
Score = 608 bits (1567), Expect = e-174, Method: Compositional matrix adjust.
Identities = 316/399 (79%), Positives = 330/399 (82%), Gaps = 29/399 (7%)
Query: 1 MCSLRAD---QIYPDPDAXXXXXXXXXDHFDRLPDSLLLLVFNKIADVKALGRCCVVSRR 57
M S RAD +I+P+P+ DHFDRLPDSLLLLVFNKI DVKALGRCCVVSRR
Sbjct: 1 MSSQRADLECRIFPEPE---------IDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRR 51
Query: 58 FHTLVPQVENVVVRVDCVIXXXXXXXXXXXXXKSRGPFWNLLRLVFGGIAKPIQTLGQFL 117
FH+LVPQVENVVVRVDCVI KSRGPFWNLLRLVFGGI KPIQTLGQFL
Sbjct: 52 FHSLVPQVENVVVRVDCVISDDDSSSSSAASDKSRGPFWNLLRLVFGGIVKPIQTLGQFL 111
Query: 118 GPKRAXXXXXXXP-----------LAVGSEDDGDGGVTHHSPTQVLKNFNEIRLLRIELP 166
GPKR LAVGS++D DGGVTHHSPTQVLKNFNEIRLLRIELP
Sbjct: 112 GPKRPSSSAAATATAATSPSSTSSLAVGSDEDSDGGVTHHSPTQVLKNFNEIRLLRIELP 171
Query: 167 SGELGIEHGVLLKWRADYGSTLDNCVILGASSVSHPKSQDGNRVDAAAASC-GSDDNGSI 225
SGELGIE GVLLKWRAD+GSTLDNCVILGASSV HPK + D +C +DDNGSI
Sbjct: 172 SGELGIEDGVLLKWRADFGSTLDNCVILGASSVFHPK----DLTDPTTTNCNANDDNGSI 227
Query: 226 PDSFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHRTLDHLVLTDADGQGVLYMNRD 285
PDSFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEH TLD+L+LTDADGQGVLYMNR+
Sbjct: 228 PDSFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHATLDNLLLTDADGQGVLYMNRE 287
Query: 286 QLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSEQSPATS 345
QLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELP GVVLKGATLVAIRPSEQSP T
Sbjct: 288 QLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPTGVVLKGATLVAIRPSEQSPNT- 346
Query: 346 AKKEASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF 384
AKKEASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF
Sbjct: 347 AKKEASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF 385
>Glyma13g29140.2
Length = 387
Score = 608 bits (1567), Expect = e-174, Method: Compositional matrix adjust.
Identities = 316/395 (80%), Positives = 329/395 (83%), Gaps = 19/395 (4%)
Query: 1 MCSLRAD---QIYPDPDAXXXXXXXXXDHFDRLPDSLLLLVFNKIADVKALGRCCVVSRR 57
M S RAD +I+P+PDA DHFDRLPDSLLLLVFNKI DVKALGRCCVVSRR
Sbjct: 1 MSSQRADLACRIFPEPDASEI------DHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRR 54
Query: 58 FHTLVPQVENVVVRVDCVIXXXXXXXXXXXXXKSRGPFWNLLRLVFGGIAKPIQTLGQFL 117
FH+LVPQVENVVVRVDCVI KSRGPFWNLLRLVFGGI KPIQTLGQFL
Sbjct: 55 FHSLVPQVENVVVRVDCVISDDDSSSSAAASDKSRGPFWNLLRLVFGGIVKPIQTLGQFL 114
Query: 118 GPKRAXXXXXXXP--------LAVGSEDDGDGGVTHHSPTQVLKNFNEIRLLRIELPSGE 169
GPKR P LAVG++DD D GVTHHSPTQVLKNFNEIRLLRIELPSGE
Sbjct: 115 GPKRPSSSSVTSPSSTTSSSPLAVGTDDDSDAGVTHHSPTQVLKNFNEIRLLRIELPSGE 174
Query: 170 LGIEHGVLLKWRADYGSTLDNCVILGASSVSHPKSQDGNRVDAAAASCGSDDNGSIPDSF 229
LGIE GVLLKWRAD+GSTLDNCVILGASSV HPK + + + +DDNGSIPDSF
Sbjct: 175 LGIEDGVLLKWRADFGSTLDNCVILGASSVFHPKDNLTDPIPTTNCN-ANDDNGSIPDSF 233
Query: 230 YTNGGLKLRVVWTISSLIAASARHYLLQPIISEHRTLDHLVLTDADGQGVLYMNRDQLEE 289
YTNGGLKLRVVWTISSLIAASARHYLLQPIISEH TLD+LVLTDADGQGVLYMNR+QLEE
Sbjct: 234 YTNGGLKLRVVWTISSLIAASARHYLLQPIISEHATLDNLVLTDADGQGVLYMNREQLEE 293
Query: 290 LRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSEQSPATSAKKE 349
LRVKPLSASSASKRTLVPALNMRLWYAPHLELP GVVLKGATLVAIRPSE SP T AKKE
Sbjct: 294 LRVKPLSASSASKRTLVPALNMRLWYAPHLELPTGVVLKGATLVAIRPSELSPNT-AKKE 352
Query: 350 ASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF 384
ASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF
Sbjct: 353 ASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF 387
>Glyma13g29140.1
Length = 387
Score = 608 bits (1567), Expect = e-174, Method: Compositional matrix adjust.
Identities = 316/395 (80%), Positives = 329/395 (83%), Gaps = 19/395 (4%)
Query: 1 MCSLRAD---QIYPDPDAXXXXXXXXXDHFDRLPDSLLLLVFNKIADVKALGRCCVVSRR 57
M S RAD +I+P+PDA DHFDRLPDSLLLLVFNKI DVKALGRCCVVSRR
Sbjct: 1 MSSQRADLACRIFPEPDASEI------DHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRR 54
Query: 58 FHTLVPQVENVVVRVDCVIXXXXXXXXXXXXXKSRGPFWNLLRLVFGGIAKPIQTLGQFL 117
FH+LVPQVENVVVRVDCVI KSRGPFWNLLRLVFGGI KPIQTLGQFL
Sbjct: 55 FHSLVPQVENVVVRVDCVISDDDSSSSAAASDKSRGPFWNLLRLVFGGIVKPIQTLGQFL 114
Query: 118 GPKRAXXXXXXXP--------LAVGSEDDGDGGVTHHSPTQVLKNFNEIRLLRIELPSGE 169
GPKR P LAVG++DD D GVTHHSPTQVLKNFNEIRLLRIELPSGE
Sbjct: 115 GPKRPSSSSVTSPSSTTSSSPLAVGTDDDSDAGVTHHSPTQVLKNFNEIRLLRIELPSGE 174
Query: 170 LGIEHGVLLKWRADYGSTLDNCVILGASSVSHPKSQDGNRVDAAAASCGSDDNGSIPDSF 229
LGIE GVLLKWRAD+GSTLDNCVILGASSV HPK + + + +DDNGSIPDSF
Sbjct: 175 LGIEDGVLLKWRADFGSTLDNCVILGASSVFHPKDNLTDPIPTTNCN-ANDDNGSIPDSF 233
Query: 230 YTNGGLKLRVVWTISSLIAASARHYLLQPIISEHRTLDHLVLTDADGQGVLYMNRDQLEE 289
YTNGGLKLRVVWTISSLIAASARHYLLQPIISEH TLD+LVLTDADGQGVLYMNR+QLEE
Sbjct: 234 YTNGGLKLRVVWTISSLIAASARHYLLQPIISEHATLDNLVLTDADGQGVLYMNREQLEE 293
Query: 290 LRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSEQSPATSAKKE 349
LRVKPLSASSASKRTLVPALNMRLWYAPHLELP GVVLKGATLVAIRPSE SP T AKKE
Sbjct: 294 LRVKPLSASSASKRTLVPALNMRLWYAPHLELPTGVVLKGATLVAIRPSELSPNT-AKKE 352
Query: 350 ASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF 384
ASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF
Sbjct: 353 ASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF 387
>Glyma07g16880.1
Length = 159
Score = 198 bits (504), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 113/210 (53%), Positives = 121/210 (57%), Gaps = 61/210 (29%)
Query: 97 NLLRLVFGGIAKPIQTLGQFLGPKR---------AXXXXXXXPLAVGSEDDGDGGVTHHS 147
NLLRLVF I KPIQTL QFL PKR A LAV S++D D GVTHHS
Sbjct: 1 NLLRLVFDRIMKPIQTLNQFLSPKRLSSSVTATAATFPSSTSSLAVDSDEDFDDGVTHHS 60
Query: 148 PTQVLKNFNEIRLLRIELPSGELGIEHGVLLKWRADYGSTLDNCVILGASSVSHPKSQDG 207
PTQVLKNFNEI LLRIE P
Sbjct: 61 PTQVLKNFNEIFLLRIEFP----------------------------------------- 79
Query: 208 NRVDAAAASCGSDDNGSIPDSFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHRTLD 267
S DN SI DSFYTNG LKLR+VWTISSL ASARHYL+Q IISEH TLD
Sbjct: 80 -----------SSDNQSITDSFYTNGDLKLRIVWTISSLNTASARHYLVQLIISEHATLD 128
Query: 268 HLVLTDADGQGVLYMNRDQLEELRVKPLSA 297
+L+LT+AD QGV YMNR+QLEELRVKPLSA
Sbjct: 129 NLLLTNADAQGVFYMNREQLEELRVKPLSA 158
>Glyma16g10050.1
Length = 114
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 102/183 (55%), Gaps = 72/183 (39%)
Query: 140 DGGVTHHSPTQVLKNFNEIRLLRIELPSGELGIEHGVLLKWRADYGSTLDNCVILGASSV 199
DG +THHSPTQVLKNFNEIRLLRIELP+G
Sbjct: 2 DGDITHHSPTQVLKNFNEIRLLRIELPNG------------------------------- 30
Query: 200 SHPKSQDGNRVDAAAASCGSDDNGSIPDSFYTNGGLKLRVVWTISSLIAASARHYLLQPI 259
DNGSIPDSFYTNGGLKL ++WTISSLIAA
Sbjct: 31 ---------------------DNGSIPDSFYTNGGLKLYIIWTISSLIAAC--------- 60
Query: 260 ISEHRTLDHLVLTDADGQGVLYMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHL 319
H LD+L+LTDADGQGV + LRVKPLS SSASKRTLV ALNMRLWY PHL
Sbjct: 61 ---HAILDNLLLTDADGQGV--------KPLRVKPLSTSSASKRTLVLALNMRLWYTPHL 109
Query: 320 ELP 322
ELP
Sbjct: 110 ELP 112
>Glyma02g26690.1
Length = 97
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/107 (73%), Positives = 84/107 (78%), Gaps = 10/107 (9%)
Query: 226 PDSFYTNGGLKLRVVWTISSLIAASARHYLLQPIISEHRTLDHLVLTDADGQGVLYMNRD 285
P + YTN GLKLRVVW ISSLIAASA+HYLLQPII EH +LD+L LTD DGQ
Sbjct: 1 PPNSYTNNGLKLRVVWIISSLIAASAKHYLLQPIIVEHASLDNLFLTDVDGQ-------- 52
Query: 286 QLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATL 332
ELRV PLSA SAS RTLVPALNMRLWYAPH+ELP GVVLKGATL
Sbjct: 53 --RELRVNPLSALSASTRTLVPALNMRLWYAPHMELPSGVVLKGATL 97
>Glyma05g19270.1
Length = 89
Score = 93.2 bits (230), Expect = 4e-19, Method: Composition-based stats.
Identities = 51/95 (53%), Positives = 59/95 (62%), Gaps = 9/95 (9%)
Query: 175 GVLLKWRADYGSTLDNCVILGASSVSHPKSQDGNRVDAAAASCGS-DDNGSIPDSFYTNG 233
GVLLKW D+GSTLDNCVI+ AS V HPK + D +C + +DN SIP+S YTNG
Sbjct: 2 GVLLKWHIDFGSTLDNCVIINASFVFHPK----DLADYTTTNCNTINDNKSIPNSLYTNG 57
Query: 234 GLKLRVVWTISSLIAASARHYLLQPIISEHRTLDH 268
LKLRVVWTI LIA P S H+T H
Sbjct: 58 SLKLRVVWTIRPLIATRVH----PPCQSSHQTEAH 88
>Glyma15g23630.1
Length = 61
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/61 (50%), Positives = 36/61 (59%), Gaps = 9/61 (14%)
Query: 97 NLLRLVFGGIAKPIQTLGQFLGPKR---------AXXXXXXXPLAVGSEDDGDGGVTHHS 147
N+LRL+F GI KPIQTL QFLGPKR A LA+G ++D DGG T H
Sbjct: 1 NILRLIFSGIIKPIQTLSQFLGPKRPSSSAAATAATSPSSTSSLAIGFDEDSDGGATLHF 60
Query: 148 P 148
P
Sbjct: 61 P 61
>Glyma06g24700.1
Length = 82
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 34 LLLLVFNKIADVKALGRCCVVSRRFHTLVPQVENVVVRV 72
++L +FNKI DVKALG CC++ H+L+P+VEN+++ +
Sbjct: 20 IILFIFNKIGDVKALGHCCIIFLHLHSLIPRVENIIIHI 58
>Glyma04g26010.1
Length = 200
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 30 LPDSLLLLVFNKIADVKALGRCCVVSRRFHTLVPQ 64
LP+ LLLLVFN I D++AL CCVV H+L+PQ
Sbjct: 166 LPNPLLLLVFNNIGDIRALSHCCVVLCHLHSLIPQ 200