Miyakogusa Predicted Gene

Lj6g3v1932840.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1932840.1 Non Chatacterized Hit- tr|A2Y7H8|A2Y7H8_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,61.18,3e-19,seg,NULL; 60S RIBOSOMAL PROTEIN L18A-RELATED,NULL;
60S RIBOSOMAL PROTEIN L18A,Ribosomal protein
L18a,NODE_41726_length_683_cov_7.893118.path1.1
         (152 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g33600.1                                                        78   3e-15
Glyma15g39350.1                                                        76   1e-14
Glyma13g28850.1                                                        67   5e-12
Glyma15g10200.1                                                        54   7e-08

>Glyma13g33600.1 
          Length = 160

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 48/80 (60%)

Query: 64  HALPVYAVAEGRPVRERRXXXXXXXXXXXXXXXXXXXXXXPWYIGAFLLLCVQMDYREKP 123
            A+P YAVAEGRPVRERR                      PWY+GA ++LC ++DYREKP
Sbjct: 74  QAVPGYAVAEGRPVRERRLGCCGLGCGWCLFILGFFLAGIPWYVGAIIMLCSRVDYREKP 133

Query: 124 GLIACAVGSLVAVIAVTLGV 143
           G IAC V +++  IA+ LGV
Sbjct: 134 GYIACVVAAVLGTIAIILGV 153


>Glyma15g39350.1 
          Length = 161

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 47/80 (58%)

Query: 64  HALPVYAVAEGRPVRERRXXXXXXXXXXXXXXXXXXXXXXPWYIGAFLLLCVQMDYREKP 123
            A+P YAVAEGRPVRER                       PWY+GA ++LC ++DYREKP
Sbjct: 75  QAVPGYAVAEGRPVRERHLGCCGLGCGWCLFILGFFLAGIPWYVGAIIMLCSRVDYREKP 134

Query: 124 GLIACAVGSLVAVIAVTLGV 143
           G IAC V +++  IA+ LGV
Sbjct: 135 GYIACVVAAVLGTIAIILGV 154


>Glyma13g28850.1 
          Length = 94

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 64  HALPVYAVAEGRPVRERRX-XXXXXXXXXXXXXXXXXXXXXPWYIGAFLLLCVQMDYREK 122
           H +PVYAVAEGRPVRERR                       PWY+G F+L+ VQMD RE 
Sbjct: 11  HVVPVYAVAEGRPVRERRLPCCGLVLVALSLFIIGWFIGGVPWYVGTFILMFVQMDCREV 70

Query: 123 PGLIAC--AVGSLVAVIAVT 140
           PGLIAC  AV  L+ +I+ +
Sbjct: 71  PGLIACTVAVSFLLQIISFS 90


>Glyma15g10200.1 
          Length = 167

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 32/64 (50%)

Query: 75  RPVRERRXXXXXXXXXXXXXXXXXXXXXXPWYIGAFLLLCVQMDYREKPGLIACAVGSLV 134
           +PVRERR                      PWY+G F+L+ V MD REKPGLIACAV    
Sbjct: 33  KPVRERRLPCCGLSLGWFLFIMGWFLGGVPWYVGTFILMFVHMDCREKPGLIACAVAKSC 92

Query: 135 AVIA 138
            VI 
Sbjct: 93  HVIV 96