Miyakogusa Predicted Gene

Lj6g3v1898120.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1898120.1 Non Chatacterized Hit- tr|Q9ZVW0|Q9ZVW0_ARATH
Putative retroelement pol polyprotein OS=Arabidopsis
t,32.61,4e-19,seg,NULL,gene.g66891.t1.1
         (213 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g38660.1                                                        69   5e-12
Glyma20g39450.2                                                        66   3e-11
Glyma09g00270.1                                                        64   1e-10
Glyma11g32880.1                                                        62   4e-10
Glyma01g41280.1                                                        58   9e-09

>Glyma18g38660.1 
          Length = 1634

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 4/128 (3%)

Query: 1   MWDDLATHEPAITCTCSG-CNCGVAAXXXXXXXXXXXHTFLMGLDDATYGPIRSNLLATD 59
           +W++L  + P   CTC   C+C                 FL GL+D  +  ++S +L  +
Sbjct: 156 LWEELEIYMPIPNCTCHHRCSCDAMRLARRHHHTLHVMRFLTGLNDE-FNAVKSQILLIE 214

Query: 60  PLPSLNKVYSILIQEERVRNITQGRDVRPEAMALAVQASAKVRGRDN--SKAVCTHCNRI 117
           PLPS+ K++S++IQ ER   +    D +    A   ++     GR N  SK  CT+C++ 
Sbjct: 215 PLPSITKIFSMVIQFERQNCVPNLDDSKALVNASTSKSQGSANGRSNSGSKRYCTYCHKT 274

Query: 118 GHEKAGCF 125
            H    CF
Sbjct: 275 NHFVENCF 282


>Glyma20g39450.2 
          Length = 2005

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 15/128 (11%)

Query: 1   MWDDLATHEPAITCTCS-GCNCGVAAXXXXXXXXXXXHTFLMGLDDATYGPIRSNLLATD 59
           +WD++    P   C+C+  C+C                 FL GL++  Y  IRS++L  D
Sbjct: 443 IWDEIENFRPDPICSCNIRCSCNAFTIIAQRKLEDRAMQFLRGLNEQ-YANIRSHVLLMD 501

Query: 60  PLPSLNKVYSILIQEER--VRNITQGRDVRPEAMALAVQASAKVRGRDNSKAVCTHCNRI 117
           P+P+++K++S + Q+ER  + N   G +  P+ +++           + +K VC  C RI
Sbjct: 502 PIPTISKIFSYVAQQERQLLGNTGPGINFEPKDISI-----------NAAKTVCDFCGRI 550

Query: 118 GHEKAGCF 125
           GH ++ C+
Sbjct: 551 GHVESTCY 558


>Glyma09g00270.1 
          Length = 791

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 14/135 (10%)

Query: 1   MWDDLATHEPAITCTCSGCNCGVAAXXXXXXXXXXXHTFLMGLDDATYGPIRSNLLATDP 60
           +W++L+ ++P   C C G                   +FLMGL+D  +  ++  +L  DP
Sbjct: 123 VWEELSGYKPTFQCKCGGLQ-----TLQDYTKSEYVMSFLMGLND-NFAQVQGQILLYDP 176

Query: 61  LPSLNKVYSILIQEERVRNITQGR--DVRPEAMALAVQAS------AKVRGRDNSKAVCT 112
           LP +  V+S+++QE+  R I       +    MA  V ++       K R     +  C 
Sbjct: 177 LPPIGNVFSLVLQEKAQREIVVNHLPSLNSNTMAFTVNSTTKNPTNGKSRNAKKERPQCA 236

Query: 113 HCNRIGHEKAGCFLL 127
           H N +GH K  C+ L
Sbjct: 237 HSNLLGHTKDKCYKL 251


>Glyma11g32880.1 
          Length = 261

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 60/119 (50%), Gaps = 18/119 (15%)

Query: 42  GLDDATYGPIRSNLLATDPLPSLNKVYSILIQEERVRNITQGRDVRPEAMA-LAVQASAK 100
           GL+D  Y   RS +L  DPLPSL+KV+SI+IQ+ER  N+     + P   A LAVQ++  
Sbjct: 117 GLNDP-YNQARSQILMLDPLPSLDKVFSIIIQQERHMNLA----ILPTPTAVLAVQSAPS 171

Query: 101 V------RGRDNSKAV----CTHCNRIGHEKAGCFLLAHNGSEGGSSASRTSKGHVRAN 149
                  RGR  SK      CTHC R  H    CF  A +G   G  + + S   + A 
Sbjct: 172 FTTASPGRGRGYSKQGQSRHCTHCGRNNHTVDTCF--AKHGYPPGWKSKKASVNQIYAT 228


>Glyma01g41280.1 
          Length = 831

 Score = 57.8 bits (138), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 25/94 (26%)

Query: 39  FLMGLDDATYGPIRSNLLATDPLPSLNKVYSILIQEERVRNITQGRDVRPEAMALAVQAS 98
           FL GL++  Y  +RSN++  DPLP L+KV+SILIQ+ER +  T              QAS
Sbjct: 131 FLRGLNE-QYSTVRSNIMMMDPLPDLDKVFSILIQQERCQMDTS-------------QAS 176

Query: 99  -AKVRGRDN----------SKAVCTHCNRIGHEK 121
             + RGR +             +C++CN+ GH K
Sbjct: 177 YGRGRGRGSHSLGGRGRGRGSKICSYCNKTGHMK 210