Miyakogusa Predicted Gene

Lj6g3v1786770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1786770.1 Non Chatacterized Hit- tr|D7MV13|D7MV13_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,42.75,3e-18,coiled-coil,NULL; seg,NULL,CUFF.59928.1
         (208 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g01220.1                                                       213   1e-55
Glyma15g12050.1                                                       210   1e-54
Glyma18g10110.1                                                        78   8e-15
Glyma08g43440.1                                                        77   9e-15

>Glyma09g01220.1 
          Length = 202

 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 120/210 (57%), Positives = 125/210 (59%), Gaps = 10/210 (4%)

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPXXXXXXXXXXXXXXXXXXXXXXX 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HVSP                       
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVSPSSASSNSNANNHHNHASHASH-- 58

Query: 61  XXXXLLLYKWTPITQSQXXXXXXXT--KXXXXXXXXXXXRRKFKYIPVAVLXXXXXXXXX 118
               LLLYKWTP+T SQ          K           RRKFKY+PVA+L         
Sbjct: 59  ----LLLYKWTPLTHSQNTATTNNANAKDSPPEPPEEPPRRKFKYVPVALLEEQKNEGAE 114

Query: 119 XXXXXXXXXXSKPIDVDSSAAEPTQKNETLDEKPDINDVPMEESESQDKNQVVRQDLNES 178
                     SKPID DS AAE T KNETLDEKPDINDVPMEES+SQ KNQVVRQDLNES
Sbjct: 115 SEGTEKVDEESKPIDADSGAAEATHKNETLDEKPDINDVPMEESQSQYKNQVVRQDLNES 174

Query: 179 TLDLSLGLTSHXXXXXXXXXXKTTQTRDDQ 208
           TLDLSLGLTSH          KT QTRD Q
Sbjct: 175 TLDLSLGLTSH--DDEHDSDSKTNQTRDGQ 202


>Glyma15g12050.1 
          Length = 201

 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/212 (57%), Positives = 128/212 (60%), Gaps = 15/212 (7%)

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPXXXXXXXXXXXXXXXXXXXXXXX 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HVSP                       
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVSPSSASSNSNANNHASNASH----- 55

Query: 61  XXXXLLLYKWTPITQSQXXXXXXXT----KXXXXXXXXXXXRRKFKYIPVAVLXXXXXXX 116
               LLLYKWTP+TQSQ            K           RRKFKY+PVA+L       
Sbjct: 56  ----LLLYKWTPLTQSQNTTNNANANGNAKDAPPEPPAEPPRRKFKYVPVALLEEQKNEA 111

Query: 117 XXXXXXXXXXXXSKPIDVDSSAAEPTQKNETLDEKPDINDVPMEESESQDKNQVVRQDLN 176
                       SKPIDVDS AAE T+KNETLDEKPDINDVPMEES+SQ KNQVVRQDLN
Sbjct: 112 AENEGTEKVDEESKPIDVDSGAAEATRKNETLDEKPDINDVPMEESQSQYKNQVVRQDLN 171

Query: 177 ESTLDLSLGLTSHXXXXXXXXXXKTTQTRDDQ 208
           ESTLDLSLGLTSH          KT QTRD Q
Sbjct: 172 ESTLDLSLGLTSH--DDEHDSDSKTNQTRDGQ 201


>Glyma18g10110.1 
          Length = 175

 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 72/179 (40%), Gaps = 19/179 (10%)

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPXXXXXXXXXXXXXXXXXXXXXXX 60
           ME VG+RL R+S+RYG  TVF+GPVRKWKKKWVHV+P                       
Sbjct: 1   MEAVGSRLSRASSRYGAPTVFSGPVRKWKKKWVHVTP---SSLPNNSSHSHTNNSTTTSS 57

Query: 61  XXXXLLLYKWTPITQSQXXXXXXXTKXXXXXXXXXXXRRKFKYIPVAVLXXXXXXXXXXX 120
               LLL +WTP T                       RRKF+Y PV VL           
Sbjct: 58  ASSRLLLRRWTPAT----------VDDAAGAVSDEPPRRKFRYTPVVVLEEQKKMNVVKA 107

Query: 121 XXXXXXXXSKPIDVDSSAAEPTQKNETLDEKPDINDVPMEESESQDKNQVVRQDLNEST 179
                      I+ D  AA  T     +  K ++N++  E  +S   N  +  D   +T
Sbjct: 108 EHEPT------IETDQLAARKTNVTHEMQGKLNMNEMLEETKDSNIGNLDLGSDFQSNT 160


>Glyma08g43440.1 
          Length = 176

 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 52/109 (47%), Gaps = 12/109 (11%)

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPXXXXXXXXXXXXXXXXXXXXXXX 60
           ME VG+RL R+++RYG  TVF+GPVRKWKKKWVHV+P                       
Sbjct: 1   MEAVGSRLSRATSRYGAPTVFSGPVRKWKKKWVHVTP--SSLPNNNSHSHTNNFTTTTTN 58

Query: 61  XXXXLLLYKWTPITQSQXXXXXXXTKXXXXXXXXXXXRRKFKYIPVAVL 109
               LLL +WTP T                       RRKF+Y P+AVL
Sbjct: 59  DSSRLLLRRWTPTTADD----------SAGAVSDDPPRRKFRYTPIAVL 97