Miyakogusa Predicted Gene

Lj6g3v1752830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1752830.1 tr|B9IH40|B9IH40_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_575904 PE=4
SV=1,45.83,4e-17,coiled-coil,NULL; seg,NULL,CUFF.59855.1
         (130 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g47570.1                                                        55   1e-08
Glyma14g01110.1                                                        54   5e-08

>Glyma02g47570.1 
          Length = 124

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 16/135 (11%)

Query: 1   MGRKSQDP---TVVSSSIALLQERFRQLQRVKEMREERELQKMMLNEPKQFNSNSNAFSH 57
           MGR+  DP   T V+SSIALLQERFRQL++VKE RE ++L K++ +E    + NS     
Sbjct: 1   MGRQGNDPSPTTTVNSSIALLQERFRQLEKVKERREGKQLLKLLSSESTSSSQNSQQQQQ 60

Query: 58  PELITXXXXXXXXXXXXXXXXASQDQDYRRSV--QTPVSMNFCPTSTYAHAQVSEKKVYE 115
           P L+                  S+  D+  ++  ++P S N  P     H   + +    
Sbjct: 61  PRLVAPHRPTLHDSLSLGLNFTSKQGDHHNTINMKSPPSSNLWP-----HGASTSRNFDT 115

Query: 116 CDSGSDPGVDTSLHL 130
            D      VDTSLHL
Sbjct: 116 SD------VDTSLHL 124


>Glyma14g01110.1 
          Length = 121

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%), Gaps = 2/42 (4%)

Query: 1  MGRKSQDP--TVVSSSIALLQERFRQLQRVKEMREERELQKM 40
          MGR+  DP  T V+SSIALLQERFRQL++VKE RE ++L+ +
Sbjct: 1  MGRQGNDPSPTTVNSSIALLQERFRQLEKVKERREGKQLKLL 42