Miyakogusa Predicted Gene

Lj6g3v1707190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1707190.1 Non Chatacterized Hit- tr|Q84JP3|Q84JP3_ARATH
Putative uncharacterized protein (Fragment)
OS=Arabido,45,3e-19,HRDC-like,HRDC-like; DNA-DIRECTED RNA POLYMERASE
II,NULL; RNA_pol_Rpb4,RNA polymerase II, Rpb4; DNA-,CUFF.59813.1
         (200 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g01880.1                                                       229   2e-60
Glyma15g12830.1                                                       214   4e-56
Glyma05g32260.1                                                        94   1e-19
Glyma16g09890.1                                                        93   2e-19
Glyma03g22220.1                                                        92   3e-19

>Glyma09g01880.1 
          Length = 211

 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 155/210 (73%), Gaps = 12/210 (5%)

Query: 3   DKTGKGFTPFGKAG--SLKGKDDSTPKSAQGRKAQFSKEGP-FQSRMNG----SPTPGGK 55
           +K GKG + F K G  SLKGKDD   KSA+GR+ QFS +GP F+S ++     S   GGK
Sbjct: 2   EKGGKGASLFSKGGLGSLKGKDDIATKSAKGRRVQFSTDGPLFESGVSSNSATSLKSGGK 61

Query: 56  GEKEDKAANGGKTSGSQD-----LKIDRELPANVKCLMDCEAADILQGIQEQMVTLSRDP 110
           G   D  A GGK S S+D      ++D++LP N+KCLMDCEA DILQGIQE+MV LSRD 
Sbjct: 62  GGMGDNVAKGGKNSQSKDSHPSDYRVDQKLPENIKCLMDCEAVDILQGIQERMVMLSRDS 121

Query: 111 TIKLPGPFDKGLQYAKSSSKYTNAKSIRRIVEPLANNGLTDCEVCVIANVCPETVDEIYA 170
           T+K+P  FDKGLQYAKS+SKY + +SIR I++ LA  G+TD E+CVI NVCPET+DE++A
Sbjct: 122 TVKMPISFDKGLQYAKSNSKYLDLQSIRHILDRLAKCGVTDSEICVIGNVCPETIDEVFA 181

Query: 171 LLPSLKGKINLNRQLLEDSVNELAKLRRPV 200
           LLPSLK + N++ Q+L+DS++ELAK R+ +
Sbjct: 182 LLPSLKDRRNIDSQVLKDSLSELAKFRQTM 211


>Glyma15g12830.1 
          Length = 252

 Score =  214 bits (546), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 118/210 (56%), Positives = 151/210 (71%), Gaps = 12/210 (5%)

Query: 3   DKTGKGFTPFGKAG--SLKGKDDSTPKSAQGRKAQFSKEGPFQSRMNGSPTPGGKGEKE- 59
           +K GKG + F K G  S KGKDDS  KSA+ R  QFS +GP       S +   +     
Sbjct: 43  EKGGKGASLFSKGGLGSQKGKDDSATKSAKKRMVQFSSDGPSFESGVSSSSLPSQKSGGK 102

Query: 60  ----DKAANGGKTSGSQDL-----KIDRELPANVKCLMDCEAADILQGIQEQMVTLSRDP 110
               D  ANGGK+S S+D      ++D++LP N+KCL+DCEA DILQGIQE+MV LSRD 
Sbjct: 103 GGKGDNVANGGKSSQSKDSHSSDHRVDQKLPENIKCLIDCEAVDILQGIQERMVMLSRDS 162

Query: 111 TIKLPGPFDKGLQYAKSSSKYTNAKSIRRIVEPLANNGLTDCEVCVIANVCPETVDEIYA 170
           TIK+P  FDKGLQYAKSS+KYT+  SIRRI++PLA  GLTD E+CVI NVCPET+DE++A
Sbjct: 163 TIKMPISFDKGLQYAKSSTKYTDLHSIRRILDPLAKCGLTDSEICVIGNVCPETIDEVFA 222

Query: 171 LLPSLKGKINLNRQLLEDSVNELAKLRRPV 200
           LLPSLK K N++RQ+L+DS+++LAK R+ +
Sbjct: 223 LLPSLKDKRNIDRQVLKDSLSQLAKFRQSM 252


>Glyma05g32260.1 
          Length = 138

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 71/115 (61%), Gaps = 1/115 (0%)

Query: 64  NGGKTSGSQDLKIDRELPANVKCLMDCEAADILQGIQEQMVTLSRDPTIKLPGPFDKGLQ 123
           +G +   + +LKI  E     KCLM+CE A IL+   EQ+   S DP  ++   F+K LQ
Sbjct: 2   SGEEEENAAELKIGDEF-LKAKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60

Query: 124 YAKSSSKYTNAKSIRRIVEPLANNGLTDCEVCVIANVCPETVDEIYALLPSLKGK 178
           Y K  S+Y N  ++R++ E LA   L + E+CV+ N+CPETV+E  A++PS+K +
Sbjct: 61  YVKRFSRYKNPDAVRQVREILARYELAEFELCVLGNLCPETVEEAIAMVPSIKSR 115


>Glyma16g09890.1 
          Length = 138

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 71/115 (61%), Gaps = 1/115 (0%)

Query: 64  NGGKTSGSQDLKIDRELPANVKCLMDCEAADILQGIQEQMVTLSRDPTIKLPGPFDKGLQ 123
           +G +   + +LKI  E     KCLM+CE + IL+   EQ+   S DP  ++   F+K LQ
Sbjct: 2   SGEEEENAAELKIGDEF-LKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQISQVFEKSLQ 60

Query: 124 YAKSSSKYTNAKSIRRIVEPLANNGLTDCEVCVIANVCPETVDEIYALLPSLKGK 178
           Y K  S+Y N  ++R++ E LA   L + E+CV+ N+CPETV+E  A++PS+K +
Sbjct: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKSR 115


>Glyma03g22220.1 
          Length = 138

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 71/115 (61%), Gaps = 1/115 (0%)

Query: 64  NGGKTSGSQDLKIDRELPANVKCLMDCEAADILQGIQEQMVTLSRDPTIKLPGPFDKGLQ 123
           +G +   + +LKI  E     KCLM+CE + IL+   EQ+   S DP  ++   F+K LQ
Sbjct: 2   SGEEEENAAELKIGDEF-LKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60

Query: 124 YAKSSSKYTNAKSIRRIVEPLANNGLTDCEVCVIANVCPETVDEIYALLPSLKGK 178
           Y K  S+Y N  ++R++ E LA   L + E+CV+ N+CPETV+E  A++PS+K +
Sbjct: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKSR 115