Miyakogusa Predicted Gene

Lj6g3v1689490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1689490.1 Non Chatacterized Hit- tr|I3SN70|I3SN70_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2 SV,84.89,0,Subunit
III of photosystem I reaction centre, PsaF,Photosystem I PsaF,
reaction centre subunit III; ,CUFF.59784.1
         (225 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g00620.1                                                       297   6e-81

>Glyma05g00620.1 
          Length = 224

 Score =  297 bits (760), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 140/154 (90%), Positives = 147/154 (95%)

Query: 72  DISGLTPCKESKQFAKREKQSIKKLESSLKLYAPDSAPALAIKASVEKTKRRFDNYAKQG 131
           DISGLTPCKESKQFAKREKQSIKKLESSLKLY   SAPALAIKASVEKTKRRFDNYAKQG
Sbjct: 71  DISGLTPCKESKQFAKREKQSIKKLESSLKLYEAGSAPALAIKASVEKTKRRFDNYAKQG 130

Query: 132 LLCGADGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAIRDEKKPTQKEII 191
           LLCG DGLPHLIVSGDQRHWGEFITPG+LFLYI+GWIGWVGRSYLIAIRDEKKPT KEII
Sbjct: 131 LLCGGDGLPHLIVSGDQRHWGEFITPGILFLYISGWIGWVGRSYLIAIRDEKKPTMKEII 190

Query: 192 IDVPLASSLVFRGFSWPIAAYREFLNGELVAKDV 225
           IDVPLAS L+FRGFSWP+AAYRE +NG+L+AKDV
Sbjct: 191 IDVPLASRLLFRGFSWPVAAYRELINGDLIAKDV 224