Miyakogusa Predicted Gene
- Lj6g3v1629840.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1629840.1 tr|B9IKF4|B9IKF4_POPTR Dicer-like protein
(Fragment) OS=Populus trichocarpa GN=DCL904 PE=4
SV=1,38.89,3e-19,RNase III domain-like,Ribonuclease III domain;
Ribonuclease_3,Ribonuclease III domain;
PAZ,Argonaute,NODE_76815_length_575_cov_56.106087.path1.1
(184 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma09g02930.1 269 2e-72
Glyma09g02920.1 263 7e-71
Glyma19g44390.2 181 4e-46
Glyma19g44390.1 181 4e-46
Glyma08g27800.1 155 2e-38
Glyma17g11240.1 117 6e-27
Glyma13g22450.1 116 1e-26
Glyma19g45060.2 110 9e-25
Glyma19g45060.1 110 9e-25
Glyma03g42290.2 106 2e-23
Glyma03g42290.1 106 2e-23
Glyma04g06060.1 99 2e-21
>Glyma09g02930.1
Length = 1414
Score = 269 bits (687), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 131/184 (71%), Positives = 149/184 (80%), Gaps = 1/184 (0%)
Query: 2 MNLDGTSPLKLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKDR 61
M LDG SP++L+ G V TYK Y++++HG QL FEHQRLLKA+ IFQVKN+CHG KQ K+
Sbjct: 851 MELDGNSPMELRGGGVTTYKKYYEQHHGIQLQFEHQRLLKARHIFQVKNHCHGRKQGKEG 910
Query: 62 EASKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNL-KMHMGSRWLNE 120
E SK FVELPPELC ++M PISD IYS+SFIPSIMHR ESLL A NL KMH+ NE
Sbjct: 911 EVSKAFVELPPELCSIVMMPISDSLIYSYSFIPSIMHRFESLLGAFNLKKMHLDHCARNE 970
Query: 121 IHALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKII 180
I +KVLEAITTKRCKE FHYESLETLGDSFLKYA +Q LF+ Y NHHEGLL+LKR KII
Sbjct: 971 IQTIKVLEAITTKRCKEAFHYESLETLGDSFLKYAASQQLFKTYHNHHEGLLSLKREKII 1030
Query: 181 SNAA 184
SNAA
Sbjct: 1031 SNAA 1034
>Glyma09g02920.1
Length = 1305
Score = 263 bits (672), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 129/185 (69%), Positives = 150/185 (81%), Gaps = 1/185 (0%)
Query: 1 MMNLDGTSPLKLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKD 60
+M L G SP++L+ GEV TYK Y++++HG QL FE+Q LLKA+ F+VKNYCHG KQ KD
Sbjct: 767 IMELHGNSPMELRGGEVTTYKKYYEQHHGIQLQFENQWLLKARHHFKVKNYCHGQKQGKD 826
Query: 61 REASKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNL-KMHMGSRWLN 119
EASK FVELPPELC ++MSPI D IY+FSFIPSIMHRLESLL A NL KMH+ N
Sbjct: 827 GEASKAFVELPPELCSIVMSPIKDSIIYTFSFIPSIMHRLESLLGAFNLKKMHLDHCTQN 886
Query: 120 EIHALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKI 179
EI +KVLEAITTKRC E FHYESLETLGDSFLKYA +Q LF+ Y+NHHEGLL++KR KI
Sbjct: 887 EIQTIKVLEAITTKRCNEAFHYESLETLGDSFLKYAASQQLFKTYKNHHEGLLSVKREKI 946
Query: 180 ISNAA 184
ISNAA
Sbjct: 947 ISNAA 951
>Glyma19g44390.2
Length = 756
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/180 (53%), Positives = 123/180 (68%), Gaps = 1/180 (0%)
Query: 4 LDGTSPLKLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKDREA 63
L+G S L + TYK +FKK HG +L FEHQ LL + +F+V+NY +Q+ ++
Sbjct: 211 LNGNSTLNQGLKGITTYKEHFKKRHGIELGFEHQSLLHGRNLFKVENYLLKTRQKTEKGK 270
Query: 64 SKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLK-MHMGSRWLNEIH 122
+ + V+LPPE+C VIMSPIS TIYSFSFIPSIMH LE LLVA NLK M + N+I
Sbjct: 271 NMSSVDLPPEVCSVIMSPISIGTIYSFSFIPSIMHWLEGLLVAFNLKRMLLDHFTPNDIP 330
Query: 123 ALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
KVL+AIT K C+E + Y+ LETLGDS+LKY V+Q LF+ QN EG L+ KR IISN
Sbjct: 331 ISKVLQAITAKGCEEAYDYDYLETLGDSYLKYIVSQQLFKTNQNDREGALSDKRKNIISN 390
>Glyma19g44390.1
Length = 788
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/180 (53%), Positives = 123/180 (68%), Gaps = 1/180 (0%)
Query: 4 LDGTSPLKLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKDREA 63
L+G S L + TYK +FKK HG +L FEHQ LL + +F+V+NY +Q+ ++
Sbjct: 211 LNGNSTLNQGLKGITTYKEHFKKRHGIELGFEHQSLLHGRNLFKVENYLLKTRQKTEKGK 270
Query: 64 SKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWL-NEIH 122
+ + V+LPPE+C VIMSPIS TIYSFSFIPSIMH LE LLVA NLK + + N+I
Sbjct: 271 NMSSVDLPPEVCSVIMSPISIGTIYSFSFIPSIMHWLEGLLVAFNLKRMLLDHFTPNDIP 330
Query: 123 ALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
KVL+AIT K C+E + Y+ LETLGDS+LKY V+Q LF+ QN EG L+ KR IISN
Sbjct: 331 ISKVLQAITAKGCEEAYDYDYLETLGDSYLKYIVSQQLFKTNQNDREGALSDKRKNIISN 390
>Glyma08g27800.1
Length = 595
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 109/172 (63%), Gaps = 8/172 (4%)
Query: 1 MMNLDGTSPLKLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKD 60
+M LDG SP++L+ G TYK L F + + FQVKNY HG KQ K+
Sbjct: 428 IMELDGNSPMELRGGGTTTYKKLLYPLECIILIFLFP--IFTRHSFQVKNYRHGHKQGKE 485
Query: 61 REASKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHR---LESLLVAVNLKMHMGSRW 117
E SK FVELPPELC ++M PISD IYSFSFI IMH+ + L+V K + + +
Sbjct: 486 -EVSKDFVELPPELCSIVMMPISDSLIYSFSFITLIMHQQFYIFMLIVLKKQKKVVKTDY 544
Query: 118 LNEIHALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHE 169
E VLEAITTKRC+E FHYESLETLGDSFLKYA +Q LF+ Y NHHE
Sbjct: 545 FTE--CFLVLEAITTKRCEEAFHYESLETLGDSFLKYAASQQLFKTYHNHHE 594
>Glyma17g11240.1
Length = 1679
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 99/169 (58%), Gaps = 4/169 (2%)
Query: 19 TYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQE--KDREASKTFVELPPELCC 76
+Y +YF + L Q LL K + + N H K E + +E + + LPPELC
Sbjct: 1004 SYVDYFIEKFSIHLKCPEQPLLHVKPVSNLHNLLHNRKHEDAEPQELDEYLIYLPPELCE 1063
Query: 77 VIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRW--LNEIHALKVLEAITTKR 134
+ + S S S +PSIMHRL +LLVA+ LK + S + EI AL+VLEA+TT++
Sbjct: 1064 LKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKHRLSSSFPEAAEISALRVLEALTTEK 1123
Query: 135 CKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISNA 183
C+E F E LE LGD+FLK+AV +H F + + HEG LT +R ++N+
Sbjct: 1124 CQERFSLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNS 1172
>Glyma13g22450.1
Length = 1394
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 100/169 (59%), Gaps = 4/169 (2%)
Query: 19 TYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQE--KDREASKTFVELPPELCC 76
+Y +YF + L Q LL K + + N H K+E + +E + + LPPELC
Sbjct: 850 SYVDYFIEKFSIHLKCPKQPLLHVKPVSNLHNLLHNRKREDAEPQELDEYLIYLPPELCE 909
Query: 77 VIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRW--LNEIHALKVLEAITTKR 134
+ + S S S +PSIMHRL +LLVA+ LK + S + EI A++VLEA+TT++
Sbjct: 910 LKVIGFSKDIGSSISLLPSIMHRLGNLLVAIELKHMLSSSFPEAAEISAIRVLEALTTEK 969
Query: 135 CKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISNA 183
C+E F E LE LGD+FLK+AV +H F + + HEG LT +R ++N+
Sbjct: 970 CQERFSLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNS 1018
>Glyma19g45060.2
Length = 1902
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 99/175 (56%), Gaps = 14/175 (8%)
Query: 16 EVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKN-----YCHGPKQEKDREAS--KTF- 67
E +Y +Y+K+ +G L + Q L++ + + KN + H E + E + KT+
Sbjct: 1250 EYSSYADYYKQKYGVDLIYRQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETHDKTYY 1309
Query: 68 VELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIHALKVL 127
V LPPELC V P+ + +PSIM R+ES+L+AV LK + + A K+L
Sbjct: 1310 VFLPPELCLV--HPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINY----PVQASKIL 1363
Query: 128 EAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
EA+T C+ETF YE E LGD++LK+ V++ LF Y HEG LT R +++SN
Sbjct: 1364 EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1418
>Glyma19g45060.1
Length = 1902
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 99/175 (56%), Gaps = 14/175 (8%)
Query: 16 EVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKN-----YCHGPKQEKDREAS--KTF- 67
E +Y +Y+K+ +G L + Q L++ + + KN + H E + E + KT+
Sbjct: 1250 EYSSYADYYKQKYGVDLIYRQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETHDKTYY 1309
Query: 68 VELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIHALKVL 127
V LPPELC V P+ + +PSIM R+ES+L+AV LK + + A K+L
Sbjct: 1310 VFLPPELCLV--HPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINY----PVQASKIL 1363
Query: 128 EAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
EA+T C+ETF YE E LGD++LK+ V++ LF Y HEG LT R +++SN
Sbjct: 1364 EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1418
>Glyma03g42290.2
Length = 1913
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 14/175 (8%)
Query: 16 EVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKN-----YCHGPKQEKDREA--SKTF- 67
E +Y +Y+K+ +G L ++ Q L++ + + KN + H E + E KT+
Sbjct: 1261 EYSSYADYYKQKYGVNLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEEIHDKTYY 1320
Query: 68 VELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIHALKVL 127
V LPPELC V P+ + +PSIM R+ES+L+AV LK + L A K+L
Sbjct: 1321 VFLPPELCLV--HPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVL----ASKIL 1374
Query: 128 EAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
A+T C+ETF YE E LGD++LK+ V++ LF Y HEG LT R +++SN
Sbjct: 1375 GALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1429
>Glyma03g42290.1
Length = 1913
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 14/175 (8%)
Query: 16 EVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKN-----YCHGPKQEKDREA--SKTF- 67
E +Y +Y+K+ +G L ++ Q L++ + + KN + H E + E KT+
Sbjct: 1261 EYSSYADYYKQKYGVNLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEEIHDKTYY 1320
Query: 68 VELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIHALKVL 127
V LPPELC V P+ + +PSIM R+ES+L+AV LK + L A K+L
Sbjct: 1321 VFLPPELCLV--HPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVL----ASKIL 1374
Query: 128 EAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
A+T C+ETF YE E LGD++LK+ V++ LF Y HEG LT R +++SN
Sbjct: 1375 GALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1429
>Glyma04g06060.1
Length = 1530
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 16/195 (8%)
Query: 3 NLDGTSPL---KLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEK 59
NL SP KS E IT+ +YF K++G L Q +L+ K+ N +E
Sbjct: 801 NLSAESPFYGNNEKSKESITFSDYFSKSYGISLRHPGQPMLRLKQSHNPHNLLFNFYEED 860
Query: 60 DREASKTF----------VELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNL 109
R+ S V +PPEL ++ + + S +PS+M+R+ESL+++ L
Sbjct: 861 ARDKSSKIGPAASKLPVHVHIPPELLYIL--DVKRDVLKSLYLLPSLMYRIESLMLSSQL 918
Query: 110 KMHM-GSRWLNEIHALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHH 168
+ + G I + +LE++TT RC E+F E LE LGDS LKY V+ HLF Y H
Sbjct: 919 REEIDGQTSKFNIRSSLILESLTTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKH 978
Query: 169 EGLLTLKRVKIISNA 183
EG L+ +R + N+
Sbjct: 979 EGQLSARRSSAVCNS 993