Miyakogusa Predicted Gene

Lj6g3v1422210.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1422210.2 tr|B9N510|B9N510_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_581778 PE=4
SV=1,65.28,3e-19,coiled-coil,NULL; seg,NULL,CUFF.59485.2
         (136 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g16520.1                                                       165   1e-41
Glyma09g05200.1                                                       138   2e-33
Glyma15g16520.2                                                       127   3e-30

>Glyma15g16520.1 
          Length = 156

 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 94/124 (75%), Gaps = 1/124 (0%)

Query: 12  RLAHPGGPLATNKAAALAKFLERKLKEPNGMDHINPDLLELAVNNAKQTVYASSASTSKR 71
           RLAHP GPLATNKAAALAKFLERKLK+PNG+  INPDLLELAVNNAK+TVYAS AS S+R
Sbjct: 33  RLAHPCGPLATNKAAALAKFLERKLKDPNGLASINPDLLELAVNNAKETVYASGASNSQR 92

Query: 72  TVRHVEFFGDSDSKDSAEEQNELSEVXXXXXXXXXXXXXXXXXXXXDVEDLGCAVVKKPK 131
            VRHV+ FGDSDSKDS+EEQNELSEV                      ED GCAVVKKPK
Sbjct: 93  NVRHVDSFGDSDSKDSSEEQNELSEVKESKKKKKKKEKKKNKKRKN-SEDPGCAVVKKPK 151

Query: 132 QKFK 135
           QKFK
Sbjct: 152 QKFK 155


>Glyma09g05200.1 
          Length = 161

 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 86/128 (67%), Gaps = 4/128 (3%)

Query: 12  RLAHPGGPLATNKAAALAKFLERKLKEPNGMDHINPDLLELAVNNAKQTVYASSASTSKR 71
           RLAHPGGPLATNKAAALAKFLERKLK+PNG+  INPD+LELAVNNAK+TVYAS  S S+R
Sbjct: 33  RLAHPGGPLATNKAAALAKFLERKLKDPNGLASINPDILELAVNNAKETVYASGTSNSRR 92

Query: 72  TVRHV-EFFGDSDSKDSAEEQNELSEV---XXXXXXXXXXXXXXXXXXXXDVEDLGCAVV 127
            VRHV  F        S EEQNELSEV                       + ED GCAV+
Sbjct: 93  NVRHVDSFGDSDSKDSSDEEQNELSEVKECKKKKKKKKKKKEKNKNKKPKNTEDPGCAVM 152

Query: 128 KKPKQKFK 135
           KKPKQKFK
Sbjct: 153 KKPKQKFK 160


>Glyma15g16520.2 
          Length = 109

 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/74 (83%), Positives = 67/74 (90%)

Query: 12  RLAHPGGPLATNKAAALAKFLERKLKEPNGMDHINPDLLELAVNNAKQTVYASSASTSKR 71
           RLAHP GPLATNKAAALAKFLERKLK+PNG+  INPDLLELAVNNAK+TVYAS AS S+R
Sbjct: 33  RLAHPCGPLATNKAAALAKFLERKLKDPNGLASINPDLLELAVNNAKETVYASGASNSQR 92

Query: 72  TVRHVEFFGDSDSK 85
            VRHV+ FGDSDSK
Sbjct: 93  NVRHVDSFGDSDSK 106