Miyakogusa Predicted Gene
- Lj6g3v1412720.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1412720.1 tr|G8A1U4|G8A1U4_MEDTR Polygalacturonase QRT3
OS=Medicago truncatula GN=MTR_126s0003 PE=4 SV=1,47.2,2e-19,Pectin
lyase-like,Pectin lyase fold/virulence factor; no description,Pectin
lyase fold,gene.g66188.t1.1
(185 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma15g16930.1 126 1e-29
Glyma08g09340.1 103 1e-22
Glyma05g26430.1 92 2e-19
Glyma09g05610.1 66 2e-11
Glyma13g06470.1 49 3e-06
>Glyma15g16930.1
Length = 475
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/137 (56%), Positives = 96/137 (70%), Gaps = 17/137 (12%)
Query: 4 QDSTCLSEEHIDLSHFRNKLIRHRVGIPLSQAPFTSAPSPSETARRGRVVNPIGYGADPT 63
Q++TC ++ H L+HFRN ++++R+ LSQ P + SP ET GRVV P+ YGADPT
Sbjct: 16 QEATCFNK-HTTLAHFRN-ILKNRMAFALSQPP---SASP-ETKMSGRVVYPVEYGADPT 69
Query: 64 GADDSSDAILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGNYKISKPITFPSY-V 122
GA +SS+AILKA+ + F I E ELVAGV+DLGGVVIDLQGGNY ISKPITFPS
Sbjct: 70 GAQESSEAILKAVGDAFGI--LSEL-ELVAGVKDLGGVVIDLQGGNYTISKPITFPSSGG 126
Query: 123 GNVVV-------SISFP 132
GN++V S SFP
Sbjct: 127 GNILVKGGTLRASDSFP 143
>Glyma08g09340.1
Length = 462
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 73/109 (66%), Gaps = 9/109 (8%)
Query: 16 LSHFRNKLIRHRVGIPLSQAPFTSAPSP----SETARRGRVVNPIGYGADPTGADDSSDA 71
LS F+ KL H+ L+ P ++ SP SET + GRV+ YGADPTG+++SSD
Sbjct: 3 LSEFKTKL--HQKIQKLATPPLSALASPPASSSETNKSGRVLYVSEYGADPTGSEESSDG 60
Query: 72 ILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGNYKISKPITFPS 120
ILKA+ + F + + ELV GV DLGGVVIDL+GGNYKISKPI FPS
Sbjct: 61 ILKAVEDAFELQKG---VELVGGVNDLGGVVIDLEGGNYKISKPIAFPS 106
>Glyma05g26430.1
Length = 416
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 60/79 (75%), Gaps = 4/79 (5%)
Query: 50 GRVVNPIGYGADPTGADDSSDAILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGN 109
GRV+ YGADPTG ++SSD ILKA+ + FA+ + EF V GV DLGGVVIDL+GGN
Sbjct: 1 GRVLYVSEYGADPTGNEESSDGILKAVEDAFALQKGVEF---VGGVNDLGGVVIDLEGGN 57
Query: 110 YKISKPITFPSYVG-NVVV 127
YKISKPI+FPS G N+VV
Sbjct: 58 YKISKPISFPSSGGANLVV 76
>Glyma09g05610.1
Length = 498
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 51 RVVNPIGYGADPTGADDSSDAILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGNY 110
RV YGADPTG DS++A+L AI E A G S+ + L+ G+RDLGG I+L+GGNY
Sbjct: 87 RVYRVTSYGADPTGNSDSTEALLAAI-EDAAKGPSEGY--LMEGIRDLGGAQINLEGGNY 143
Query: 111 KISKPITFP-SYVGNVVV 127
IS+ + P + VGN+++
Sbjct: 144 LISRSLKLPVAGVGNLMI 161
>Glyma13g06470.1
Length = 489
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 18/78 (23%)
Query: 58 YGADPTGADDSSD-------AILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGNY 110
YGADPTG DS++ K +EGF L+ ++DLGG I+L+GG Y
Sbjct: 89 YGADPTGNSDSTEALLAAIADAAKGPSEGF----------LMKDIKDLGGAQINLEGGKY 138
Query: 111 KISKPITFP-SYVGNVVV 127
IS+P+ P + GN+++
Sbjct: 139 IISQPLKLPLARAGNLMI 156