Miyakogusa Predicted Gene

Lj6g3v1333190.3
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1333190.3 Non Chatacterized Hit- tr|J3N9K8|J3N9K8_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB11G2,34.71,4e-19,DNA
BINDING / DNA-DIRECTED RNA POLYMERASE,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; RNA_pol_I_A49,RNA p,CUFF.59368.3
         (163 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g17850.1                                                       207   3e-54
Glyma15g17850.2                                                       207   3e-54
Glyma09g06660.1                                                        52   4e-07

>Glyma15g17850.1 
          Length = 424

 Score =  207 bits (528), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 111/164 (67%), Positives = 122/164 (74%), Gaps = 4/164 (2%)

Query: 2   LQLGEEADFSAYPTFICNRIARLKQIKDESEKKKISCIYSYINHLIKFKDQHTLDGVSSA 61
           LQ GEEADFSAYPTF+ NRI RL++IKDESEKK++SCI+SYINHLIKFKDQH+ D V SA
Sbjct: 263 LQRGEEADFSAYPTFVRNRIERLRKIKDESEKKQLSCIFSYINHLIKFKDQHSFD-VLSA 321

Query: 62  KSHKIPPILRHKFSSMFGVFEXXXXXXXXXXXXICYVLVLTLFCDEFQTDYTDISKDLRK 121
           K HKIP ILRHKFS+MF V E            ICYVLVLTLF DEF+TDYTDI+KDL  
Sbjct: 322 KGHKIPNILRHKFSNMFAVSESKRLPPEKISLLICYVLVLTLFSDEFRTDYTDIAKDLSM 381

Query: 122 GESLVRDCYNKLGCKIPPQKKI--CTLPVPLKFPPDSNQRKRKR 163
               VR  Y  LGCKI  QK I   TLPVPLKF P+  QRKRKR
Sbjct: 382 NILPVRQLYEHLGCKISRQKNIFYATLPVPLKF-PELRQRKRKR 424


>Glyma15g17850.2 
          Length = 412

 Score =  207 bits (528), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 111/164 (67%), Positives = 122/164 (74%), Gaps = 4/164 (2%)

Query: 2   LQLGEEADFSAYPTFICNRIARLKQIKDESEKKKISCIYSYINHLIKFKDQHTLDGVSSA 61
           LQ GEEADFSAYPTF+ NRI RL++IKDESEKK++SCI+SYINHLIKFKDQH+ D V SA
Sbjct: 251 LQRGEEADFSAYPTFVRNRIERLRKIKDESEKKQLSCIFSYINHLIKFKDQHSFD-VLSA 309

Query: 62  KSHKIPPILRHKFSSMFGVFEXXXXXXXXXXXXICYVLVLTLFCDEFQTDYTDISKDLRK 121
           K HKIP ILRHKFS+MF V E            ICYVLVLTLF DEF+TDYTDI+KDL  
Sbjct: 310 KGHKIPNILRHKFSNMFAVSESKRLPPEKISLLICYVLVLTLFSDEFRTDYTDIAKDLSM 369

Query: 122 GESLVRDCYNKLGCKIPPQKKI--CTLPVPLKFPPDSNQRKRKR 163
               VR  Y  LGCKI  QK I   TLPVPLKF P+  QRKRKR
Sbjct: 370 NILPVRQLYEHLGCKISRQKNIFYATLPVPLKF-PELRQRKRKR 412


>Glyma09g06660.1 
          Length = 49

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 28/43 (65%)

Query: 77  MFGVFEXXXXXXXXXXXXICYVLVLTLFCDEFQTDYTDISKDL 119
           MF V E            ICYVLVLTLF DEF+TDYTDI+KDL
Sbjct: 1   MFAVSESKRLPPEKINLLICYVLVLTLFSDEFRTDYTDIAKDL 43