Miyakogusa Predicted Gene

Lj6g3v1330870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1330870.1 tr|G7IG89|G7IG89_MEDTR DNA ligase OS=Medicago
truncatula GN=MTR_2g038030 PE=3 SV=1,90.31,0,DNA ligase/mRNA capping
enzyme, catalytic domain,NULL; seg,NULL; DNA_ligase_A_N,DNA ligase,
ATP-depe,CUFF.59350.1
         (270 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g06760.1                                                       307   1e-83

>Glyma09g06760.1 
          Length = 995

 Score =  307 bits (786), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 162/208 (77%), Positives = 168/208 (80%), Gaps = 21/208 (10%)

Query: 66  AEKNLGLSTLIRKTNTQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLV 125
           AEK L LSTLI+KTN Q+MKWIIMIILKDLKLGISEKSIFHEFHPDAE LF VTCDLKLV
Sbjct: 2   AEKILVLSTLIQKTNAQKMKWIIMIILKDLKLGISEKSIFHEFHPDAEVLFKVTCDLKLV 61

Query: 126 CEKLKDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGDRIQIHK 185
           CEKL+DRNQRHKRQDIEVGKAV PQLAKRVANA EAWK LHGKEVVVECKFDG  IQI K
Sbjct: 62  CEKLRDRNQRHKRQDIEVGKAVCPQLAKRVANATEAWKNLHGKEVVVECKFDGGCIQIRK 121

Query: 186 NGTEIHFFSR----NFLDHSEYAHAMSAIIIQNI----------LVD-RCILDGEMLVWD 230
           N TEIHFFSR    NF+DHSEYAHAMS IIIQN+          L D  CILDGEMLVWD
Sbjct: 122 NRTEIHFFSRQVHMNFIDHSEYAHAMSEIIIQNVLGACNYNLEGLFDIMCILDGEMLVWD 181

Query: 231 TSLNRFAEFGSNQEIAKAARDGLDSHRK 258
           TSL  FAEF      AKAARDG DS R+
Sbjct: 182 TSLKHFAEF------AKAARDGPDSDRQ 203