Miyakogusa Predicted Gene

Lj6g3v1318670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1318670.1 Non Chatacterized Hit- tr|C6THQ8|C6THQ8_SOYBN
Putative uncharacterized protein (Fragment)
OS=Glycine,58.33,2e-18,LISH,LisH dimerisation motif; seg,NULL;
Lissencephaly type-1-like homology motif,LisH dimerisation
m,NODE_56480_length_408_cov_67.357841.path2.1
         (114 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g00430.2                                                       145   8e-36
Glyma13g00430.1                                                       143   5e-35
Glyma17g06540.2                                                        87   4e-18
Glyma17g06540.1                                                        85   2e-17

>Glyma13g00430.2 
          Length = 372

 Score =  145 bits (367), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 83/114 (72%), Gaps = 3/114 (2%)

Query: 1   MPATPPSHKASSSTIFAFTPRQVLLRNQTMKHDADNGXXXXXXXXXXXXXHQSIARYFDR 60
           MPATPPS+K   ST+FAFTPRQVLL NQTMKH  DNG             HQSIARY +R
Sbjct: 1   MPATPPSNKGRISTLFAFTPRQVLLSNQTMKHTTDNGTPISEHKVLL---HQSIARYLER 57

Query: 61  RGLSKSLKKFRSEAKIEKDNVDESSVDLEELFLKYLETCSQDVKSNVNDQKEQG 114
            G SK+LKKF SEA IEK++++ S VDLEE+ LKYLE C +D KSN+NDQ EQG
Sbjct: 58  SGFSKTLKKFLSEAHIEKNDLEGSPVDLEEMCLKYLEICGKDGKSNINDQNEQG 111


>Glyma13g00430.1 
          Length = 374

 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 82/113 (72%), Gaps = 3/113 (2%)

Query: 1   MPATPPSHKASSSTIFAFTPRQVLLRNQTMKHDADNGXXXXXXXXXXXXXHQSIARYFDR 60
           MPATPPS+K   ST+FAFTPRQVLL NQTMKH  DNG             HQSIARY +R
Sbjct: 1   MPATPPSNKGRISTLFAFTPRQVLLSNQTMKHTTDNGTPISEHKVLL---HQSIARYLER 57

Query: 61  RGLSKSLKKFRSEAKIEKDNVDESSVDLEELFLKYLETCSQDVKSNVNDQKEQ 113
            G SK+LKKF SEA IEK++++ S VDLEE+ LKYLE C +D KSN+NDQ EQ
Sbjct: 58  SGFSKTLKKFLSEAHIEKNDLEGSPVDLEEMCLKYLEICGKDGKSNINDQNEQ 110


>Glyma17g06540.2 
          Length = 345

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 49/64 (76%)

Query: 51  HQSIARYFDRRGLSKSLKKFRSEAKIEKDNVDESSVDLEELFLKYLETCSQDVKSNVNDQ 110
           HQSIARY    G SK+LKKFRSEA+ EK+++  S VDLEE+ LKY E C +D KSN+NDQ
Sbjct: 18  HQSIARYLKHSGFSKTLKKFRSEAQFEKNDLKGSPVDLEEMCLKYFEICGKDAKSNLNDQ 77

Query: 111 KEQG 114
            EQG
Sbjct: 78  NEQG 81


>Glyma17g06540.1 
          Length = 347

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 48/63 (76%)

Query: 51  HQSIARYFDRRGLSKSLKKFRSEAKIEKDNVDESSVDLEELFLKYLETCSQDVKSNVNDQ 110
           HQSIARY    G SK+LKKFRSEA+ EK+++  S VDLEE+ LKY E C +D KSN+NDQ
Sbjct: 18  HQSIARYLKHSGFSKTLKKFRSEAQFEKNDLKGSPVDLEEMCLKYFEICGKDAKSNLNDQ 77

Query: 111 KEQ 113
            EQ
Sbjct: 78  NEQ 80