Miyakogusa Predicted Gene

Lj6g3v1239570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1239570.1 Non Chatacterized Hit- tr|C6TG27|C6TG27_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2 S,83.61,0,RNA
recognition motif,RNA recognition motif domain; RRM_1,RNA recognition
motif domain; PUTATIVE UNC,CUFF.59284.1
         (155 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g29190.2                                                       190   6e-49
Glyma02g29190.1                                                       190   6e-49
Glyma09g17080.2                                                       177   3e-45
Glyma09g17080.1                                                       177   3e-45
Glyma09g36730.1                                                        83   1e-16
Glyma17g35080.1                                                        49   1e-06
Glyma02g47690.1                                                        49   2e-06
Glyma14g00970.1                                                        49   2e-06
Glyma02g47690.2                                                        49   3e-06
Glyma13g11650.1                                                        49   3e-06
Glyma04g05070.1                                                        48   4e-06
Glyma19g00530.1                                                        48   5e-06
Glyma06g05150.1                                                        47   8e-06

>Glyma02g29190.2 
          Length = 211

 Score =  190 bits (482), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 94/111 (84%), Positives = 99/111 (89%), Gaps = 2/111 (1%)

Query: 12  SLKRVTAINKPSEGPDFLPLEGGPARKL--PEQKPLENKGRVLYVGRIPHGFYEKEIEGY 69
           +LKR +  NKPSEG DFLPLEGGPARKL   +QKP EN   VLYVGRIPHGFYEKE+EGY
Sbjct: 11  NLKRASFNNKPSEGADFLPLEGGPARKLAASQQKPPENTATVLYVGRIPHGFYEKEMEGY 70

Query: 70  FGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 120
           FGQFGTIKRLRIARNK +GKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL
Sbjct: 71  FGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 121


>Glyma02g29190.1 
          Length = 211

 Score =  190 bits (482), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 94/111 (84%), Positives = 99/111 (89%), Gaps = 2/111 (1%)

Query: 12  SLKRVTAINKPSEGPDFLPLEGGPARKL--PEQKPLENKGRVLYVGRIPHGFYEKEIEGY 69
           +LKR +  NKPSEG DFLPLEGGPARKL   +QKP EN   VLYVGRIPHGFYEKE+EGY
Sbjct: 11  NLKRASFNNKPSEGADFLPLEGGPARKLAASQQKPPENTATVLYVGRIPHGFYEKEMEGY 70

Query: 70  FGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 120
           FGQFGTIKRLRIARNK +GKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL
Sbjct: 71  FGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 121


>Glyma09g17080.2 
          Length = 214

 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/113 (79%), Positives = 95/113 (84%), Gaps = 4/113 (3%)

Query: 12  SLKRVTAINKPSEGPDFLPLEGGPARKLPEQK----PLENKGRVLYVGRIPHGFYEKEIE 67
           +LKR +    PSE  DFLPLEGGPARKL  Q+    P EN   VLYVGRIPHGFYEKE+E
Sbjct: 12  NLKRASFNKNPSEDADFLPLEGGPARKLAGQQKPPPPPENTATVLYVGRIPHGFYEKEME 71

Query: 68  GYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 120
           GYFGQFGTIKRLRIARNK +GKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL
Sbjct: 72  GYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 124


>Glyma09g17080.1 
          Length = 214

 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/113 (79%), Positives = 95/113 (84%), Gaps = 4/113 (3%)

Query: 12  SLKRVTAINKPSEGPDFLPLEGGPARKLPEQK----PLENKGRVLYVGRIPHGFYEKEIE 67
           +LKR +    PSE  DFLPLEGGPARKL  Q+    P EN   VLYVGRIPHGFYEKE+E
Sbjct: 12  NLKRASFNKNPSEDADFLPLEGGPARKLAGQQKPPPPPENTATVLYVGRIPHGFYEKEME 71

Query: 68  GYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 120
           GYFGQFGTIKRLRIARNK +GKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL
Sbjct: 72  GYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHL 124


>Glyma09g36730.1 
          Length = 89

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 49/72 (68%), Gaps = 6/72 (8%)

Query: 12 SLKRVTAINKPSEGPDFLPLEGGPARKLPEQKPLENKGRVLYVGRIPHGFYEKEIEGYFG 71
          +LKR T  NKPSE  DFL LEGGP  K PEQK L+N   VLYVGRIPHGFYEKE+EG   
Sbjct: 23 NLKRATT-NKPSEDADFLSLEGGPVCKQPEQKLLKNTATVLYVGRIPHGFYEKEMEG--- 78

Query: 72 QFGTIKRLRIAR 83
            G IK   + R
Sbjct: 79 --GKIKTFWVHR 88


>Glyma17g35080.1 
          Length = 180

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 48  KGRVLYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIV 107
           K   ++VG +P G  E+E + YF +FGTI  + + ++  T + R FGFI F+S    K+V
Sbjct: 9   KNEKIFVGGLPSGISEEEFKNYFERFGTITDVVVIQDSVTHRPRGFGFITFDS---EKLV 65

Query: 108 ADTMHN 113
            + M N
Sbjct: 66  ENVMLN 71


>Glyma02g47690.1 
          Length = 538

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTM 111
           L++G I     E+ +  YF  +G +    I +++TTG++R FGF+ F  P VA+IV    
Sbjct: 8   LFIGGISWDTNEERLREYFCTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEK 67

Query: 112 HN 113
           HN
Sbjct: 68  HN 69


>Glyma14g00970.1 
          Length = 479

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTM 111
           L++G I     E+ +  YF  +G +    I +++TTG++R FGF+ F  P +A+IV    
Sbjct: 8   LFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAIAEIVIKEK 67

Query: 112 HN 113
           HN
Sbjct: 68  HN 69


>Glyma02g47690.2 
          Length = 495

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTM 111
           L++G I     E+ +  YF  +G +    I +++TTG++R FGF+ F  P VA+IV    
Sbjct: 8   LFIGGISWDTNEERLREYFCTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEK 67

Query: 112 HN 113
           HN
Sbjct: 68  HN 69


>Glyma13g11650.1 
          Length = 352

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 37  RKLPEQKPLEN--KGRVLYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFG 94
           R +P+     N  K + ++VG IP    E E++ +F ++G +    I R+ TT +SR FG
Sbjct: 91  RTIPKGSSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFG 150

Query: 95  FIEFESPEVA-KIVAD 109
           FI F+S +V   I+AD
Sbjct: 151 FIVFDSEKVVDNILAD 166


>Glyma04g05070.1 
          Length = 380

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPE-VAKIVADT 110
           ++VG +P G  E+E + YF +FG I  + + ++  T + R FGFI FES E V  ++  +
Sbjct: 130 IFVGGLPAGISEEEFKNYFERFGRITDVVVMQDSVTHRPRGFGFITFESEESVQNVMVKS 189

Query: 111 MHN 113
            H+
Sbjct: 190 FHD 192


>Glyma19g00530.1 
          Length = 377

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPEVAKIVADTM 111
           ++VG IP    E E   +F ++G +K  +I R+ +T +SR FGFI FES E    +  +M
Sbjct: 132 IFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFESEEAVDDLL-SM 190

Query: 112 HNYLLF 117
            N + F
Sbjct: 191 GNKIDF 196


>Glyma06g05150.1 
          Length = 378

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 52  LYVGRIPHGFYEKEIEGYFGQFGTIKRLRIARNKTTGKSRHFGFIEFESPE-VAKIVADT 110
           ++VG +P G  E+E + YF +FG I  + + ++  T + R FGFI FES + V  ++  +
Sbjct: 130 IFVGGLPAGISEEEFKNYFERFGRITDVVVMQDSVTHRPRGFGFITFESEDSVQNVMVKS 189

Query: 111 MHN 113
            H+
Sbjct: 190 FHD 192