Miyakogusa Predicted Gene

Lj6g3v1239560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1239560.1 tr|G7IIL3|G7IIL3_MEDTR RecA OS=Medicago
truncatula GN=MTR_2g039670 PE=3 SV=1,84.98,0,RECA_1,DNA
recombination/repair protein RecA, conserved site; DNA REPAIR PROTEIN
RECA,DNA recombinat,CUFF.59283.1
         (426 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g07400.1                                                       696   0.0  
Glyma17g06180.1                                                       635   0.0  
Glyma17g06180.2                                                       626   e-179
Glyma15g18590.1                                                       617   e-177
Glyma13g16490.1                                                       459   e-129
Glyma19g31600.1                                                       284   1e-76
Glyma15g27640.1                                                       265   5e-71
Glyma03g28880.1                                                       102   1e-21

>Glyma09g07400.1 
          Length = 439

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/425 (82%), Positives = 375/425 (88%), Gaps = 8/425 (1%)

Query: 1   MARLLRNANTFLLKRSFLHHNLPTRSCYEQGVVGTSQVLSFSTHKG-----KRRSKSDGD 55
           MA LLRNAN  LLKRS  H +L TR C++ GV+GTSQVLSFST KG     KRRSKSDG 
Sbjct: 1   MASLLRNANISLLKRSLFHSDLLTRFCFKPGVLGTSQVLSFSTRKGFFKHSKRRSKSDGS 60

Query: 56  ESSEENMSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGG 115
           +S EEN+SKKDLALQQA+DQITSA+GKGSIMWLGRSV+PKNVPVVSTGSFALDIALG+GG
Sbjct: 61  DSGEENLSKKDLALQQAIDQITSAYGKGSIMWLGRSVAPKNVPVVSTGSFALDIALGVGG 120

Query: 116 LPKGRVVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLL 175
           LPKGRVVEIFGPEASGKTTLALHVI+EAQK GGYCAFVDAEHALDKTLAESIGV+TKNLL
Sbjct: 121 LPKGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCAFVDAEHALDKTLAESIGVDTKNLL 180

Query: 176 LSQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQAL 235
           LSQPDCGEQALSLVDTLIRSG            LVPKGELDGEMGDAHMAMQARLMSQAL
Sbjct: 181 LSQPDCGEQALSLVDTLIRSGSVDAIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 240

Query: 236 RKLCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVK 295
           RKLCHSLSLSQCILIFINQVRSKISTFGG+GGPTEVTCGGNALKFY+SVRLNIKRIG VK
Sbjct: 241 RKLCHSLSLSQCILIFINQVRSKISTFGGYGGPTEVTCGGNALKFYASVRLNIKRIGFVK 300

Query: 296 KGEETLGSHVLVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYE 355
           KGEETLGS VLVKVVKNKHAPPFKTAQFE+EFGKGI R+AEIIELS+KYK+I+KSGSF+E
Sbjct: 301 KGEETLGSQVLVKVVKNKHAPPFKTAQFEIEFGKGISREAEIIELSVKYKIIKKSGSFFE 360

Query: 356 YNGRNYHGKDALKRFLADSSSTEELATKLREKLLNGETDTAPEAQVTIGDV---SEETVF 412
           YNGRN+HGKDALKRFLA+S   +ELATKLREK+L+ E +  PE Q  IGDV    EE V 
Sbjct: 361 YNGRNFHGKDALKRFLAESDGVQELATKLREKILDAEPELEPEEQEMIGDVMELMEEMVS 420

Query: 413 PDSTD 417
            DSTD
Sbjct: 421 LDSTD 425


>Glyma17g06180.1 
          Length = 459

 Score =  635 bits (1638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/441 (74%), Positives = 362/441 (82%), Gaps = 23/441 (5%)

Query: 1   MARLLRNANTFLLKRSFLHHNLPTRSCYEQGVVGTSQVLSFSTHKGKRRSKSDGDESSEE 60
           MARLLRN  T LL RS     +     ++ G++GTSQ+LSFS+ KG+RRSKSDG +S EE
Sbjct: 27  MARLLRN--TSLLTRSLFFPKV-----FKLGMIGTSQILSFSS-KGRRRSKSDGSDSGEE 78

Query: 61  NMSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGR 120
           NMSKK+LALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALD+ALGIGGLPKGR
Sbjct: 79  NMSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDVALGIGGLPKGR 138

Query: 121 VVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPD 180
           VVEI+GPEASGKTTLALHVI+EAQK GGYC FVDAEHALDKTLAESIGVNT NLLLSQPD
Sbjct: 139 VVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTTNLLLSQPD 198

Query: 181 CGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCH 240
           CGEQALSLVDTLIRSG            LVPKGELDGEMGDAHMAMQARLMSQALRKL H
Sbjct: 199 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 258

Query: 241 SLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEET 300
           +LSLSQ ILIFINQVRSKISTFGGF GPTEVTCGGNALKFY+SVRLNIKRIG VKKGEE 
Sbjct: 259 ALSLSQTILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEI 318

Query: 301 LGSHVLVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRN 360
           LGS VLVKVVKNK APPFKTA+FEL+FGKGIC++ EII+LS+ +KLI K+G+ + YN  +
Sbjct: 319 LGSQVLVKVVKNKLAPPFKTAEFELQFGKGICKETEIIDLSVNHKLISKAGAMFYYNEHS 378

Query: 361 YHGKDALKRFLADS-SSTEELATKLREKLLNGETDTAPEAQVTIGDVSEE---------- 409
           + GKDALK FLA++ S+ EEL  KLREKLLN ET+   E+ V  G V+EE          
Sbjct: 379 FRGKDALKNFLAENRSALEELEMKLREKLLNAETEKMQESDVINGYVTEEIATVDSTNDN 438

Query: 410 ----TVFPDSTDEEAAAVVEA 426
                   DSTDEEAAA+VEA
Sbjct: 439 VTEKIATVDSTDEEAAAIVEA 459


>Glyma17g06180.2 
          Length = 423

 Score =  626 bits (1614), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 316/414 (76%), Positives = 349/414 (84%), Gaps = 16/414 (3%)

Query: 28  YEQGVVGTSQVLSFSTHKGKRRSKSDGDESSEENMSKKDLALQQALDQITSAFGKGSIMW 87
           ++ G++GTSQ+LSFS+ KG+RRSKSDG +S EENMSKK+LALQQALDQITSAFGKGSIMW
Sbjct: 11  FKLGMIGTSQILSFSS-KGRRRSKSDGSDSGEENMSKKELALQQALDQITSAFGKGSIMW 69

Query: 88  LGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGPEASGKTTLALHVISEAQKLG 147
           LGRSVSPKNVPVVSTGSFALD+ALGIGGLPKGRVVEI+GPEASGKTTLALHVI+EAQK G
Sbjct: 70  LGRSVSPKNVPVVSTGSFALDVALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQG 129

Query: 148 GYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXXXX 207
           GYC FVDAEHALDKTLAESIGVNT NLLLSQPDCGEQALSLVDTLIRSG           
Sbjct: 130 GYCVFVDAEHALDKTLAESIGVNTTNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVA 189

Query: 208 XLVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFGG 267
            LVPKGELDGEMGDAHMAMQARLMSQALRKL H+LSLSQ ILIFINQVRSKISTFGGF G
Sbjct: 190 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQTILIFINQVRSKISTFGGFSG 249

Query: 268 PTEVTCGGNALKFYSSVRLNIKRIGLVKKGEETLGSHVLVKVVKNKHAPPFKTAQFELEF 327
           PTEVTCGGNALKFY+SVRLNIKRIG VKKGEE LGS VLVKVVKNK APPFKTA+FEL+F
Sbjct: 250 PTEVTCGGNALKFYASVRLNIKRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELQF 309

Query: 328 GKGICRDAEIIELSIKYKLIRKSGSFYEYNGRNYHGKDALKRFLADS-SSTEELATKLRE 386
           GKGIC++ EII+LS+ +KLI K+G+ + YN  ++ GKDALK FLA++ S+ EEL  KLRE
Sbjct: 310 GKGICKETEIIDLSVNHKLISKAGAMFYYNEHSFRGKDALKNFLAENRSALEELEMKLRE 369

Query: 387 KLLNGETDTAPEAQVTIGDVSEE--------------TVFPDSTDEEAAAVVEA 426
           KLLN ET+   E+ V  G V+EE                  DSTDEEAAA+VEA
Sbjct: 370 KLLNAETEKMQESDVINGYVTEEIATVDSTNDNVTEKIATVDSTDEEAAAIVEA 423


>Glyma15g18590.1 
          Length = 371

 Score =  617 bits (1592), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 303/362 (83%), Positives = 327/362 (90%), Gaps = 3/362 (0%)

Query: 62  MSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRV 121
           MSKKD+ALQQA+DQITSA+GKGSIMWLGRS++PKNVPVVSTGSFALDIALG+GGLPKGRV
Sbjct: 1   MSKKDMALQQAIDQITSAYGKGSIMWLGRSMAPKNVPVVSTGSFALDIALGVGGLPKGRV 60

Query: 122 VEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDC 181
           VEIFGPEASGKTTLALH+I+EAQKLGGYCAFVDAEHALDKTLAESIGV+TKNLLLSQPDC
Sbjct: 61  VEIFGPEASGKTTLALHMIAEAQKLGGYCAFVDAEHALDKTLAESIGVDTKNLLLSQPDC 120

Query: 182 GEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCHS 241
           GEQALSLVDTLIRSG            LVPKGELDGEMGDAHMAMQARLMSQALRKLCHS
Sbjct: 121 GEQALSLVDTLIRSGSVDAIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHS 180

Query: 242 LSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEETL 301
           LSLSQCIL+FINQVRSKISTFGG+GGPTEVTCGGNALKFY+SVRLNIKRIG VKKGEETL
Sbjct: 181 LSLSQCILVFINQVRSKISTFGGYGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETL 240

Query: 302 GSHVLVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRNY 361
           GS VLVKVVKNKHAPPFKTAQFE+EFGKGI R+AEIIELS+KYK+I+KSGSF+EYNGRN+
Sbjct: 241 GSQVLVKVVKNKHAPPFKTAQFEIEFGKGISREAEIIELSVKYKIIKKSGSFFEYNGRNF 300

Query: 362 HGKDALKRFLADSSSTEELATKLREKLLNGETDTAPEAQVTIGDVSE--ETVFPDSTDEE 419
           HGKDALKRFLA+S   +ELAT LREK+LN E +   E Q  IGDV E  E    DSTDE 
Sbjct: 301 HGKDALKRFLAESDGVQELATMLREKILNAEPELEQEEQEMIGDVMELMEKTL-DSTDEA 359

Query: 420 AA 421
           A+
Sbjct: 360 AS 361


>Glyma13g16490.1 
          Length = 369

 Score =  459 bits (1180), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/398 (63%), Positives = 286/398 (71%), Gaps = 32/398 (8%)

Query: 28  YEQGVVGTSQVLSFSTHKGKRRSKSDGDESSEENMSKKDLALQQALDQITSAFGKGSIMW 87
           ++ G++GTSQ+LSFS+ KG+RRSKSDG +S EENMSKK+LALQQALDQITSAFG GSIMW
Sbjct: 2   FKLGIIGTSQILSFSS-KGRRRSKSDGSDSDEENMSKKELALQQALDQITSAFGNGSIMW 60

Query: 88  LGRSVSPKNVPVVSTGSFALDIALGIGGLPK-GRVVEIFGPEASGKTTLALHVISEAQKL 146
           LGRSVSPK++PVVSTGSFALD+AL IGGLP   +    F  +  G     L   +    +
Sbjct: 61  LGRSVSPKSLPVVSTGSFALDVALVIGGLPGFCKNNSCFTCDCRGTEARRLSSYNALTMI 120

Query: 147 GGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXXX 206
            GYC FVDAEHALDK LAESIGVNT NLLLSQPDCGEQALSLVDTLIRSG          
Sbjct: 121 FGYCVFVDAEHALDKKLAESIGVNTTNLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSV 180

Query: 207 XXLVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFG 266
             LVPKGELDGEMG AHMAMQARLMSQALRKL H L            VRS ISTFGGF 
Sbjct: 181 AALVPKGELDGEMGHAHMAMQARLMSQALRKLSHCL------------VRSNISTFGGFS 228

Query: 267 GPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEETLGSHVLVKVVKNKHAPPFKTAQFELE 326
           GPTE               L + RIG VKKGEE LGS VLVKVVKNK  PPFK A+FEL+
Sbjct: 229 GPTE---------------LLVVRIGFVKKGEEILGSQVLVKVVKNKLVPPFKIAEFELQ 273

Query: 327 FGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRNYHGKDALKRFLADS-SSTEELATKLR 385
           FGKGI ++ EII+LS+K KLI K+G+ + YN +++ GKDALK FLA++ S+ EEL  KLR
Sbjct: 274 FGKGISKETEIIDLSVKNKLISKAGAMFYYNEQSFRGKDALKNFLAENQSALEELEMKLR 333

Query: 386 EKLLNGETDTAPEAQVTIGDVSEETVFPDSTDEEAAAV 423
           EKLLN ET+   +  V  GDV E     DSTDEEAAA+
Sbjct: 334 EKLLNAETEKMWD--VINGDVREAIATVDSTDEEAAAI 369


>Glyma19g31600.1 
          Length = 386

 Score =  284 bits (727), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 145/327 (44%), Positives = 217/327 (66%), Gaps = 1/327 (0%)

Query: 63  SKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVV 122
           ++KD AL  A+ Q+ S F K S++ L +    +   V+STGS  LD+ALGIGGLPKGR+V
Sbjct: 58  AEKDNALCLAVSQLASEFSKESMLSLQKIFGVRRAHVISTGSLKLDLALGIGGLPKGRIV 117

Query: 123 EIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCG 182
           EI+G EA+GKTTLA+ +I EAQKLGGYCA++D E+ALD +L ES+G++T+NLL+S PDC 
Sbjct: 118 EIYGREAAGKTTLAIQIIKEAQKLGGYCAYLDVENALDFSLMESMGIDTENLLISHPDCA 177

Query: 183 EQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCHSL 242
           E  LS+VDTL +SG            LVPK ELD      +  +Q+R+M+QALRK+ +SL
Sbjct: 178 ENLLSMVDTLTKSGAVDVIVIDSVAALVPKCELDQLGVTTNRDLQSRMMTQALRKIHYSL 237

Query: 243 SLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEETLG 302
           S SQ +++FINQ+R    +   +G   EVTCGGNAL+FY++VRL + R+ L+K  ++  G
Sbjct: 238 SHSQTLIVFINQIRLSPKSAKEYGSVEEVTCGGNALRFYAAVRLRLSRVRLIKTEDKVEG 297

Query: 303 SHVLVKVVKNKHAP-PFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRNY 361
             +  +VVKNK AP   K A+  ++FG+G C ++++++L+ ++ +  K    Y   G ++
Sbjct: 298 VMICAQVVKNKLAPAATKRAELGIKFGRGFCHESDVLDLACEHGIFVKHEGSYFIEGNSF 357

Query: 362 HGKDALKRFLADSSSTEELATKLREKL 388
             ++A + FLA + +  +   K   +L
Sbjct: 358 DSREAAELFLAQNHAVCDKVVKDMRRL 384


>Glyma15g27640.1 
          Length = 414

 Score =  265 bits (678), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 146/334 (43%), Positives = 215/334 (64%), Gaps = 9/334 (2%)

Query: 68  ALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGP 127
           AL+ A++ I + FGKGS+  LG S     V    +G   LD ALG GGLPKGR++EI+GP
Sbjct: 67  ALEAAMNDINNNFGKGSVTRLG-SAGGALVETFPSGCLTLDCALG-GGLPKGRIIEIYGP 124

Query: 128 EASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALS 187
           E+SGKTTLALH I+E QKLGG    VDAEHA D   ++++GV+ +NL++ QPD GE AL 
Sbjct: 125 ESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGEMALE 184

Query: 188 LVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQC 247
           + D + RSG            L P+ E++GE+G   + +QARLMSQALRK+  + S + C
Sbjct: 185 IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGC 244

Query: 248 ILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVK--KGEETLGSHV 305
            LIF+NQ+R KI  +  +G P EVT GG ALKF++S+RL ++  G +K  KG+E +G  V
Sbjct: 245 TLIFLNQIRYKIGVY--YGNP-EVTSGGIALKFFASLRLEVRPTGKIKSAKGDEEIGLKV 301

Query: 306 LVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEY-NGRNYHGK 364
            ++V K+K + P+K A+FE+ FG+GI +   I++ +    ++ K GS+Y Y + R   G+
Sbjct: 302 RLRVQKSKVSRPYKIAEFEIIFGEGISKLGCILDCAEMTDIVSKKGSWYSYGDHRLGQGR 361

Query: 365 DALKRFLADSSS-TEELATKLREKLLNGETDTAP 397
           D   ++L +++   EE+   +R  L++G   T+P
Sbjct: 362 DKAIQYLKENTHLLEEIEKVVRSSLIDGTNQTSP 395


>Glyma03g28880.1 
          Length = 213

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 13/107 (12%)

Query: 63  SKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVV 122
           + KD AL  AL Q+   FG             +   V+S GS  L +ALGI GLPKGR+V
Sbjct: 38  ADKDNALCLALSQL-KIFG------------VRRARVISIGSLKLHLALGIRGLPKGRIV 84

Query: 123 EIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGV 169
           EI+G +A+GKTT+AL +I EAQKLGGYCA++D E+ALD +L ES+GV
Sbjct: 85  EIYGRDAAGKTTIALRIIKEAQKLGGYCAYLDVENALDFSLMESMGV 131