Miyakogusa Predicted Gene
- Lj6g3v1239560.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1239560.1 tr|G7IIL3|G7IIL3_MEDTR RecA OS=Medicago
truncatula GN=MTR_2g039670 PE=3 SV=1,84.98,0,RECA_1,DNA
recombination/repair protein RecA, conserved site; DNA REPAIR PROTEIN
RECA,DNA recombinat,CUFF.59283.1
(426 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma09g07400.1 696 0.0
Glyma17g06180.1 635 0.0
Glyma17g06180.2 626 e-179
Glyma15g18590.1 617 e-177
Glyma13g16490.1 459 e-129
Glyma19g31600.1 284 1e-76
Glyma15g27640.1 265 5e-71
Glyma03g28880.1 102 1e-21
>Glyma09g07400.1
Length = 439
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/425 (82%), Positives = 375/425 (88%), Gaps = 8/425 (1%)
Query: 1 MARLLRNANTFLLKRSFLHHNLPTRSCYEQGVVGTSQVLSFSTHKG-----KRRSKSDGD 55
MA LLRNAN LLKRS H +L TR C++ GV+GTSQVLSFST KG KRRSKSDG
Sbjct: 1 MASLLRNANISLLKRSLFHSDLLTRFCFKPGVLGTSQVLSFSTRKGFFKHSKRRSKSDGS 60
Query: 56 ESSEENMSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGG 115
+S EEN+SKKDLALQQA+DQITSA+GKGSIMWLGRSV+PKNVPVVSTGSFALDIALG+GG
Sbjct: 61 DSGEENLSKKDLALQQAIDQITSAYGKGSIMWLGRSVAPKNVPVVSTGSFALDIALGVGG 120
Query: 116 LPKGRVVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLL 175
LPKGRVVEIFGPEASGKTTLALHVI+EAQK GGYCAFVDAEHALDKTLAESIGV+TKNLL
Sbjct: 121 LPKGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCAFVDAEHALDKTLAESIGVDTKNLL 180
Query: 176 LSQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQAL 235
LSQPDCGEQALSLVDTLIRSG LVPKGELDGEMGDAHMAMQARLMSQAL
Sbjct: 181 LSQPDCGEQALSLVDTLIRSGSVDAIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQAL 240
Query: 236 RKLCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVK 295
RKLCHSLSLSQCILIFINQVRSKISTFGG+GGPTEVTCGGNALKFY+SVRLNIKRIG VK
Sbjct: 241 RKLCHSLSLSQCILIFINQVRSKISTFGGYGGPTEVTCGGNALKFYASVRLNIKRIGFVK 300
Query: 296 KGEETLGSHVLVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYE 355
KGEETLGS VLVKVVKNKHAPPFKTAQFE+EFGKGI R+AEIIELS+KYK+I+KSGSF+E
Sbjct: 301 KGEETLGSQVLVKVVKNKHAPPFKTAQFEIEFGKGISREAEIIELSVKYKIIKKSGSFFE 360
Query: 356 YNGRNYHGKDALKRFLADSSSTEELATKLREKLLNGETDTAPEAQVTIGDV---SEETVF 412
YNGRN+HGKDALKRFLA+S +ELATKLREK+L+ E + PE Q IGDV EE V
Sbjct: 361 YNGRNFHGKDALKRFLAESDGVQELATKLREKILDAEPELEPEEQEMIGDVMELMEEMVS 420
Query: 413 PDSTD 417
DSTD
Sbjct: 421 LDSTD 425
>Glyma17g06180.1
Length = 459
Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/441 (74%), Positives = 362/441 (82%), Gaps = 23/441 (5%)
Query: 1 MARLLRNANTFLLKRSFLHHNLPTRSCYEQGVVGTSQVLSFSTHKGKRRSKSDGDESSEE 60
MARLLRN T LL RS + ++ G++GTSQ+LSFS+ KG+RRSKSDG +S EE
Sbjct: 27 MARLLRN--TSLLTRSLFFPKV-----FKLGMIGTSQILSFSS-KGRRRSKSDGSDSGEE 78
Query: 61 NMSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGR 120
NMSKK+LALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALD+ALGIGGLPKGR
Sbjct: 79 NMSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDVALGIGGLPKGR 138
Query: 121 VVEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPD 180
VVEI+GPEASGKTTLALHVI+EAQK GGYC FVDAEHALDKTLAESIGVNT NLLLSQPD
Sbjct: 139 VVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTTNLLLSQPD 198
Query: 181 CGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCH 240
CGEQALSLVDTLIRSG LVPKGELDGEMGDAHMAMQARLMSQALRKL H
Sbjct: 199 CGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSH 258
Query: 241 SLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEET 300
+LSLSQ ILIFINQVRSKISTFGGF GPTEVTCGGNALKFY+SVRLNIKRIG VKKGEE
Sbjct: 259 ALSLSQTILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEI 318
Query: 301 LGSHVLVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRN 360
LGS VLVKVVKNK APPFKTA+FEL+FGKGIC++ EII+LS+ +KLI K+G+ + YN +
Sbjct: 319 LGSQVLVKVVKNKLAPPFKTAEFELQFGKGICKETEIIDLSVNHKLISKAGAMFYYNEHS 378
Query: 361 YHGKDALKRFLADS-SSTEELATKLREKLLNGETDTAPEAQVTIGDVSEE---------- 409
+ GKDALK FLA++ S+ EEL KLREKLLN ET+ E+ V G V+EE
Sbjct: 379 FRGKDALKNFLAENRSALEELEMKLREKLLNAETEKMQESDVINGYVTEEIATVDSTNDN 438
Query: 410 ----TVFPDSTDEEAAAVVEA 426
DSTDEEAAA+VEA
Sbjct: 439 VTEKIATVDSTDEEAAAIVEA 459
>Glyma17g06180.2
Length = 423
Score = 626 bits (1614), Expect = e-179, Method: Compositional matrix adjust.
Identities = 316/414 (76%), Positives = 349/414 (84%), Gaps = 16/414 (3%)
Query: 28 YEQGVVGTSQVLSFSTHKGKRRSKSDGDESSEENMSKKDLALQQALDQITSAFGKGSIMW 87
++ G++GTSQ+LSFS+ KG+RRSKSDG +S EENMSKK+LALQQALDQITSAFGKGSIMW
Sbjct: 11 FKLGMIGTSQILSFSS-KGRRRSKSDGSDSGEENMSKKELALQQALDQITSAFGKGSIMW 69
Query: 88 LGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGPEASGKTTLALHVISEAQKLG 147
LGRSVSPKNVPVVSTGSFALD+ALGIGGLPKGRVVEI+GPEASGKTTLALHVI+EAQK G
Sbjct: 70 LGRSVSPKNVPVVSTGSFALDVALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQG 129
Query: 148 GYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXXXX 207
GYC FVDAEHALDKTLAESIGVNT NLLLSQPDCGEQALSLVDTLIRSG
Sbjct: 130 GYCVFVDAEHALDKTLAESIGVNTTNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVA 189
Query: 208 XLVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFGG 267
LVPKGELDGEMGDAHMAMQARLMSQALRKL H+LSLSQ ILIFINQVRSKISTFGGF G
Sbjct: 190 ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQTILIFINQVRSKISTFGGFSG 249
Query: 268 PTEVTCGGNALKFYSSVRLNIKRIGLVKKGEETLGSHVLVKVVKNKHAPPFKTAQFELEF 327
PTEVTCGGNALKFY+SVRLNIKRIG VKKGEE LGS VLVKVVKNK APPFKTA+FEL+F
Sbjct: 250 PTEVTCGGNALKFYASVRLNIKRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELQF 309
Query: 328 GKGICRDAEIIELSIKYKLIRKSGSFYEYNGRNYHGKDALKRFLADS-SSTEELATKLRE 386
GKGIC++ EII+LS+ +KLI K+G+ + YN ++ GKDALK FLA++ S+ EEL KLRE
Sbjct: 310 GKGICKETEIIDLSVNHKLISKAGAMFYYNEHSFRGKDALKNFLAENRSALEELEMKLRE 369
Query: 387 KLLNGETDTAPEAQVTIGDVSEE--------------TVFPDSTDEEAAAVVEA 426
KLLN ET+ E+ V G V+EE DSTDEEAAA+VEA
Sbjct: 370 KLLNAETEKMQESDVINGYVTEEIATVDSTNDNVTEKIATVDSTDEEAAAIVEA 423
>Glyma15g18590.1
Length = 371
Score = 617 bits (1592), Expect = e-177, Method: Compositional matrix adjust.
Identities = 303/362 (83%), Positives = 327/362 (90%), Gaps = 3/362 (0%)
Query: 62 MSKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRV 121
MSKKD+ALQQA+DQITSA+GKGSIMWLGRS++PKNVPVVSTGSFALDIALG+GGLPKGRV
Sbjct: 1 MSKKDMALQQAIDQITSAYGKGSIMWLGRSMAPKNVPVVSTGSFALDIALGVGGLPKGRV 60
Query: 122 VEIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDC 181
VEIFGPEASGKTTLALH+I+EAQKLGGYCAFVDAEHALDKTLAESIGV+TKNLLLSQPDC
Sbjct: 61 VEIFGPEASGKTTLALHMIAEAQKLGGYCAFVDAEHALDKTLAESIGVDTKNLLLSQPDC 120
Query: 182 GEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCHS 241
GEQALSLVDTLIRSG LVPKGELDGEMGDAHMAMQARLMSQALRKLCHS
Sbjct: 121 GEQALSLVDTLIRSGSVDAIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHS 180
Query: 242 LSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEETL 301
LSLSQCIL+FINQVRSKISTFGG+GGPTEVTCGGNALKFY+SVRLNIKRIG VKKGEETL
Sbjct: 181 LSLSQCILVFINQVRSKISTFGGYGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETL 240
Query: 302 GSHVLVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRNY 361
GS VLVKVVKNKHAPPFKTAQFE+EFGKGI R+AEIIELS+KYK+I+KSGSF+EYNGRN+
Sbjct: 241 GSQVLVKVVKNKHAPPFKTAQFEIEFGKGISREAEIIELSVKYKIIKKSGSFFEYNGRNF 300
Query: 362 HGKDALKRFLADSSSTEELATKLREKLLNGETDTAPEAQVTIGDVSE--ETVFPDSTDEE 419
HGKDALKRFLA+S +ELAT LREK+LN E + E Q IGDV E E DSTDE
Sbjct: 301 HGKDALKRFLAESDGVQELATMLREKILNAEPELEQEEQEMIGDVMELMEKTL-DSTDEA 359
Query: 420 AA 421
A+
Sbjct: 360 AS 361
>Glyma13g16490.1
Length = 369
Score = 459 bits (1180), Expect = e-129, Method: Compositional matrix adjust.
Identities = 251/398 (63%), Positives = 286/398 (71%), Gaps = 32/398 (8%)
Query: 28 YEQGVVGTSQVLSFSTHKGKRRSKSDGDESSEENMSKKDLALQQALDQITSAFGKGSIMW 87
++ G++GTSQ+LSFS+ KG+RRSKSDG +S EENMSKK+LALQQALDQITSAFG GSIMW
Sbjct: 2 FKLGIIGTSQILSFSS-KGRRRSKSDGSDSDEENMSKKELALQQALDQITSAFGNGSIMW 60
Query: 88 LGRSVSPKNVPVVSTGSFALDIALGIGGLPK-GRVVEIFGPEASGKTTLALHVISEAQKL 146
LGRSVSPK++PVVSTGSFALD+AL IGGLP + F + G L + +
Sbjct: 61 LGRSVSPKSLPVVSTGSFALDVALVIGGLPGFCKNNSCFTCDCRGTEARRLSSYNALTMI 120
Query: 147 GGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXXX 206
GYC FVDAEHALDK LAESIGVNT NLLLSQPDCGEQALSLVDTLIRSG
Sbjct: 121 FGYCVFVDAEHALDKKLAESIGVNTTNLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSV 180
Query: 207 XXLVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFG 266
LVPKGELDGEMG AHMAMQARLMSQALRKL H L VRS ISTFGGF
Sbjct: 181 AALVPKGELDGEMGHAHMAMQARLMSQALRKLSHCL------------VRSNISTFGGFS 228
Query: 267 GPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEETLGSHVLVKVVKNKHAPPFKTAQFELE 326
GPTE L + RIG VKKGEE LGS VLVKVVKNK PPFK A+FEL+
Sbjct: 229 GPTE---------------LLVVRIGFVKKGEEILGSQVLVKVVKNKLVPPFKIAEFELQ 273
Query: 327 FGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRNYHGKDALKRFLADS-SSTEELATKLR 385
FGKGI ++ EII+LS+K KLI K+G+ + YN +++ GKDALK FLA++ S+ EEL KLR
Sbjct: 274 FGKGISKETEIIDLSVKNKLISKAGAMFYYNEQSFRGKDALKNFLAENQSALEELEMKLR 333
Query: 386 EKLLNGETDTAPEAQVTIGDVSEETVFPDSTDEEAAAV 423
EKLLN ET+ + V GDV E DSTDEEAAA+
Sbjct: 334 EKLLNAETEKMWD--VINGDVREAIATVDSTDEEAAAI 369
>Glyma19g31600.1
Length = 386
Score = 284 bits (727), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 145/327 (44%), Positives = 217/327 (66%), Gaps = 1/327 (0%)
Query: 63 SKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVV 122
++KD AL A+ Q+ S F K S++ L + + V+STGS LD+ALGIGGLPKGR+V
Sbjct: 58 AEKDNALCLAVSQLASEFSKESMLSLQKIFGVRRAHVISTGSLKLDLALGIGGLPKGRIV 117
Query: 123 EIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCG 182
EI+G EA+GKTTLA+ +I EAQKLGGYCA++D E+ALD +L ES+G++T+NLL+S PDC
Sbjct: 118 EIYGREAAGKTTLAIQIIKEAQKLGGYCAYLDVENALDFSLMESMGIDTENLLISHPDCA 177
Query: 183 EQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCHSL 242
E LS+VDTL +SG LVPK ELD + +Q+R+M+QALRK+ +SL
Sbjct: 178 ENLLSMVDTLTKSGAVDVIVIDSVAALVPKCELDQLGVTTNRDLQSRMMTQALRKIHYSL 237
Query: 243 SLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVKKGEETLG 302
S SQ +++FINQ+R + +G EVTCGGNAL+FY++VRL + R+ L+K ++ G
Sbjct: 238 SHSQTLIVFINQIRLSPKSAKEYGSVEEVTCGGNALRFYAAVRLRLSRVRLIKTEDKVEG 297
Query: 303 SHVLVKVVKNKHAP-PFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEYNGRNY 361
+ +VVKNK AP K A+ ++FG+G C ++++++L+ ++ + K Y G ++
Sbjct: 298 VMICAQVVKNKLAPAATKRAELGIKFGRGFCHESDVLDLACEHGIFVKHEGSYFIEGNSF 357
Query: 362 HGKDALKRFLADSSSTEELATKLREKL 388
++A + FLA + + + K +L
Sbjct: 358 DSREAAELFLAQNHAVCDKVVKDMRRL 384
>Glyma15g27640.1
Length = 414
Score = 265 bits (678), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 146/334 (43%), Positives = 215/334 (64%), Gaps = 9/334 (2%)
Query: 68 ALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIFGP 127
AL+ A++ I + FGKGS+ LG S V +G LD ALG GGLPKGR++EI+GP
Sbjct: 67 ALEAAMNDINNNFGKGSVTRLG-SAGGALVETFPSGCLTLDCALG-GGLPKGRIIEIYGP 124
Query: 128 EASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALS 187
E+SGKTTLALH I+E QKLGG VDAEHA D ++++GV+ +NL++ QPD GE AL
Sbjct: 125 ESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGEMALE 184
Query: 188 LVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQC 247
+ D + RSG L P+ E++GE+G + +QARLMSQALRK+ + S + C
Sbjct: 185 IADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGC 244
Query: 248 ILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGLVK--KGEETLGSHV 305
LIF+NQ+R KI + +G P EVT GG ALKF++S+RL ++ G +K KG+E +G V
Sbjct: 245 TLIFLNQIRYKIGVY--YGNP-EVTSGGIALKFFASLRLEVRPTGKIKSAKGDEEIGLKV 301
Query: 306 LVKVVKNKHAPPFKTAQFELEFGKGICRDAEIIELSIKYKLIRKSGSFYEY-NGRNYHGK 364
++V K+K + P+K A+FE+ FG+GI + I++ + ++ K GS+Y Y + R G+
Sbjct: 302 RLRVQKSKVSRPYKIAEFEIIFGEGISKLGCILDCAEMTDIVSKKGSWYSYGDHRLGQGR 361
Query: 365 DALKRFLADSSS-TEELATKLREKLLNGETDTAP 397
D ++L +++ EE+ +R L++G T+P
Sbjct: 362 DKAIQYLKENTHLLEEIEKVVRSSLIDGTNQTSP 395
>Glyma03g28880.1
Length = 213
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 13/107 (12%)
Query: 63 SKKDLALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVV 122
+ KD AL AL Q+ FG + V+S GS L +ALGI GLPKGR+V
Sbjct: 38 ADKDNALCLALSQL-KIFG------------VRRARVISIGSLKLHLALGIRGLPKGRIV 84
Query: 123 EIFGPEASGKTTLALHVISEAQKLGGYCAFVDAEHALDKTLAESIGV 169
EI+G +A+GKTT+AL +I EAQKLGGYCA++D E+ALD +L ES+GV
Sbjct: 85 EIYGRDAAGKTTIALRIIKEAQKLGGYCAYLDVENALDFSLMESMGV 131