Miyakogusa Predicted Gene

Lj6g3v1211750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1211750.1 tr|Q56YV7|Q56YV7_ARATH Ribosomal protein L18ae
family protein OS=Arabidopsis thaliana GN=At1g54217
P,62.37,4e-19,seg,NULL,CUFF.59250.1
         (140 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g07680.1                                                       206   9e-54
Glyma17g06010.2                                                       198   2e-51
Glyma17g06010.1                                                       198   2e-51
Glyma13g16680.2                                                       190   4e-49
Glyma13g16680.1                                                       190   4e-49
Glyma15g18880.1                                                       189   7e-49
Glyma07g03960.1                                                       115   2e-26
Glyma16g00620.1                                                       107   4e-24
Glyma10g24750.1                                                        63   1e-10

>Glyma09g07680.1 
          Length = 138

 Score =  206 bits (523), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 98/136 (72%), Positives = 105/136 (77%), Gaps = 4/136 (2%)

Query: 7   MEETADLRNGVELTRPVSDKHLDLLRPSARNYSVFR----DATDNDKGKYALIRDPEDFQ 62
           MEET DLRNGVEL   VSDKHLDLLRPSARNYS+FR    D  D++KG Y LI+ PEDFQ
Sbjct: 1   MEETVDLRNGVELATSVSDKHLDLLRPSARNYSIFRGQAMDVADHEKGNYTLIKGPEDFQ 60

Query: 63  AGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRERXXXXXXXXXXX 122
            GLYDKPLPC+GCG+GWFSFL GFLCPPLWYYATILYFGNYYRKDPRER           
Sbjct: 61  TGLYDKPLPCYGCGIGWFSFLFGFLCPPLWYYATILYFGNYYRKDPRERAGLGASAIAAL 120

Query: 123 XCSVALLITGVILLFH 138
            CSVALLI G IL+  
Sbjct: 121 ICSVALLIVGAILMLR 136


>Glyma17g06010.2 
          Length = 144

 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 105/140 (75%), Gaps = 2/140 (1%)

Query: 1   MDKGASMEETADLRNGVELTRPVSDKHLDLLRPSARNYSVFR--DATDNDKGKYALIRDP 58
           MDK A +EET DLR  VEL R VSDKH DLLRPSARNYS  +  D T   KGKYALIRDP
Sbjct: 1   MDKDARVEETVDLRTNVELVRSVSDKHHDLLRPSARNYSRGQSTDTTGRGKGKYALIRDP 60

Query: 59  EDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRERXXXXXXX 118
           EDFQ G+YDKPLPCFGCG+GWFSFL GFLCPP+W+YATILYFGN+YRKDPRER       
Sbjct: 61  EDFQMGVYDKPLPCFGCGIGWFSFLFGFLCPPMWFYATILYFGNHYRKDPRERAGLGASA 120

Query: 119 XXXXXCSVALLITGVILLFH 138
                CSV  LI GVIL+  
Sbjct: 121 IAALVCSVTSLIIGVILVLR 140


>Glyma17g06010.1 
          Length = 144

 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 105/140 (75%), Gaps = 2/140 (1%)

Query: 1   MDKGASMEETADLRNGVELTRPVSDKHLDLLRPSARNYSVFR--DATDNDKGKYALIRDP 58
           MDK A +EET DLR  VEL R VSDKH DLLRPSARNYS  +  D T   KGKYALIRDP
Sbjct: 1   MDKDARVEETVDLRTNVELVRSVSDKHHDLLRPSARNYSRGQSTDTTGRGKGKYALIRDP 60

Query: 59  EDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRERXXXXXXX 118
           EDFQ G+YDKPLPCFGCG+GWFSFL GFLCPP+W+YATILYFGN+YRKDPRER       
Sbjct: 61  EDFQMGVYDKPLPCFGCGIGWFSFLFGFLCPPMWFYATILYFGNHYRKDPRERAGLGASA 120

Query: 119 XXXXXCSVALLITGVILLFH 138
                CSV  LI GVIL+  
Sbjct: 121 IAALVCSVTSLIIGVILVLR 140


>Glyma13g16680.2 
          Length = 144

 Score =  190 bits (482), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/139 (67%), Positives = 104/139 (74%), Gaps = 2/139 (1%)

Query: 1   MDKGASMEETADLRNGVELTRPVSDKHLDLLRPSARNYSVFR--DATDNDKGKYALIRDP 58
           MDK A +EET DLR  VEL R VSDKH DLLRPSARN S  +  DA  + KGKYALIRDP
Sbjct: 1   MDKDARVEETVDLRTNVELVRSVSDKHHDLLRPSARNLSRGQSTDAAGHGKGKYALIRDP 60

Query: 59  EDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRERXXXXXXX 118
           E FQ G+YDKPLP FGCG+GWFSFL GFLCPP+W+YATILYFGN+YRKDPRER       
Sbjct: 61  EVFQTGVYDKPLPFFGCGIGWFSFLFGFLCPPMWFYATILYFGNHYRKDPRERAGLGASA 120

Query: 119 XXXXXCSVALLITGVILLF 137
                CSVA L+ GVIL+ 
Sbjct: 121 IAALVCSVASLMIGVILVL 139


>Glyma13g16680.1 
          Length = 144

 Score =  190 bits (482), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/139 (67%), Positives = 104/139 (74%), Gaps = 2/139 (1%)

Query: 1   MDKGASMEETADLRNGVELTRPVSDKHLDLLRPSARNYSVFR--DATDNDKGKYALIRDP 58
           MDK A +EET DLR  VEL R VSDKH DLLRPSARN S  +  DA  + KGKYALIRDP
Sbjct: 1   MDKDARVEETVDLRTNVELVRSVSDKHHDLLRPSARNLSRGQSTDAAGHGKGKYALIRDP 60

Query: 59  EDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRERXXXXXXX 118
           E FQ G+YDKPLP FGCG+GWFSFL GFLCPP+W+YATILYFGN+YRKDPRER       
Sbjct: 61  EVFQTGVYDKPLPFFGCGIGWFSFLFGFLCPPMWFYATILYFGNHYRKDPRERAGLGASA 120

Query: 119 XXXXXCSVALLITGVILLF 137
                CSVA L+ GVIL+ 
Sbjct: 121 IAALVCSVASLMIGVILVL 139


>Glyma15g18880.1 
          Length = 133

 Score =  189 bits (480), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 89/110 (80%), Positives = 94/110 (85%), Gaps = 4/110 (3%)

Query: 6   SMEETADLRNGVELTRPVSDKHLDLLRPSARNYSVFR----DATDNDKGKYALIRDPEDF 61
            MEET DLRNGVEL   VSDKHLDLLRPSARNYS+FR    D  D++KG Y LIR PEDF
Sbjct: 2   GMEETVDLRNGVELAASVSDKHLDLLRPSARNYSIFRGQAMDVADHEKGNYTLIRGPEDF 61

Query: 62  QAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRER 111
           Q GLYDKPLPC+GCG+GWFSFL GFLCPPLWYYATILYFGNYYRKDPRER
Sbjct: 62  QTGLYDKPLPCYGCGIGWFSFLFGFLCPPLWYYATILYFGNYYRKDPRER 111


>Glyma07g03960.1 
          Length = 96

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 63/94 (67%)

Query: 43  DATDNDKGKYALIRDPEDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGN 102
           D  D  KGKYA  RD E+   G +DKPLPCFGCG+GWFS L GF+CPP+WYYATILYFGN
Sbjct: 2   DTADQRKGKYAPTRDTENPLLGKFDKPLPCFGCGIGWFSLLLGFVCPPMWYYATILYFGN 61

Query: 103 YYRKDPRERXXXXXXXXXXXXCSVALLITGVILL 136
           YY KDPRER             ++A ++T  ++ 
Sbjct: 62  YYHKDPRERAGLAASAIAALVFTIAAVVTVAVIF 95


>Glyma16g00620.1 
          Length = 119

 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 53/69 (76%)

Query: 43  DATDNDKGKYALIRDPEDFQAGLYDKPLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGN 102
           D  D  KG+Y   RD E+   G +DKPLPCFGCG+GWFS L GF+CP +WYYATILYFGN
Sbjct: 2   DTADQRKGEYPPTRDTENPLLGKFDKPLPCFGCGIGWFSLLLGFVCPLMWYYATILYFGN 61

Query: 103 YYRKDPRER 111
           YY KDPRER
Sbjct: 62  YYHKDPRER 70


>Glyma10g24750.1 
          Length = 50

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/31 (90%), Positives = 28/31 (90%)

Query: 80  FSFLCGFLCPPLWYYATILYFGNYYRKDPRE 110
           F  L GFLCPPLWYYATILYFGNYYRKDPRE
Sbjct: 20  FKILFGFLCPPLWYYATILYFGNYYRKDPRE 50