Miyakogusa Predicted Gene
- Lj6g3v1105040.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1105040.1 Non Chatacterized Hit- tr|I0Z4P9|I0Z4P9_9CHLO
Uncharacterized protein (Fragment) OS=Coccomyxa
subell,44.96,4e-19,FAMILY NOT NAMED,NULL; LSD1: zinc finger domain,
LSD1 subclass,Zinc finger, LSD1-type; zf-LSD1,Zinc
,NODE_56327_length_431_cov_77.517403.path2.1
(112 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma05g30490.1 181 1e-46
Glyma08g13630.1 181 2e-46
Glyma05g30490.3 178 1e-45
Glyma08g13630.2 178 1e-45
Glyma05g30490.2 178 1e-45
Glyma09g10010.1 176 3e-45
Glyma15g22140.2 172 1e-43
Glyma15g22140.1 171 1e-43
Glyma17g16600.4 148 1e-36
Glyma05g23710.1 148 1e-36
Glyma17g16600.3 147 3e-36
Glyma01g40720.1 142 7e-35
Glyma17g16600.1 140 3e-34
Glyma17g16600.2 101 2e-22
Glyma05g23710.2 100 3e-22
Glyma07g31600.1 77 3e-15
Glyma18g35280.1 58 2e-09
>Glyma05g30490.1
Length = 177
Score = 181 bits (460), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/113 (76%), Positives = 99/113 (87%), Gaps = 1/113 (0%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
M+ Q+VCNGCR++L+YPRGA NVCCA CN IT VPP GMEMSQLYCGGCRTLLMY GAT
Sbjct: 1 MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGAT 60
Query: 61 SVRCSCCNTITRVPE-SNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVS 112
SVRCSCC+T+ VP SNQV+H+HCGNCRT LMYP+GA SVKCA+CH+ITNVS
Sbjct: 61 SVRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITNVS 113
>Glyma08g13630.1
Length = 177
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/113 (76%), Positives = 99/113 (87%), Gaps = 1/113 (0%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
M+ Q+VCNGCR++L+YPRGA NVCCA CN IT VPP GMEMSQLYCGGCRTLLMY GAT
Sbjct: 1 MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGAT 60
Query: 61 SVRCSCCNTITRVPE-SNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVS 112
SVRCSCC+T+ VP SNQV+H+HCGNCRT LMYP+GA SVKCA+CH+ITNVS
Sbjct: 61 SVRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITNVS 113
>Glyma05g30490.3
Length = 175
Score = 178 bits (452), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 98/113 (86%), Gaps = 1/113 (0%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
M+ Q+VCNGCR++L+YPRGA NVCCA CN IT VPP GMEMSQLYCGGCRTLLMY GAT
Sbjct: 1 MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGAT 60
Query: 61 SVRCSCCNTITRVPE-SNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVS 112
SVRCSCC+T+ VP SNQV+H+HCGNCRT LMYP+GA SVKCA+CH+ITN +
Sbjct: 61 SVRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITNTN 113
>Glyma08g13630.2
Length = 175
Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 98/113 (86%), Gaps = 1/113 (0%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
M+ Q+VCNGCR++L+YPRGA NVCCA CN IT VPP GMEMSQLYCGGCRTLLMY GAT
Sbjct: 1 MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGAT 60
Query: 61 SVRCSCCNTITRVPE-SNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVS 112
SVRCSCC+T+ VP SNQV+H+HCGNCRT LMYP+GA SVKCA+CH+ITN +
Sbjct: 61 SVRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITNTN 113
>Glyma05g30490.2
Length = 147
Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/113 (76%), Positives = 99/113 (87%), Gaps = 1/113 (0%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
M+ Q+VCNGCR++L+YPRGA NVCCA CN IT VPP GMEMSQLYCGGCRTLLMY GAT
Sbjct: 1 MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGAT 60
Query: 61 SVRCSCCNTITRVPE-SNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVS 112
SVRCSCC+T+ VP SNQV+H+HCGNCRT LMYP+GA SVKCA+CH+ITNVS
Sbjct: 61 SVRCSCCHTVNLVPPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITNVS 113
>Glyma09g10010.1
Length = 174
Score = 176 bits (447), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 95/112 (84%), Gaps = 2/112 (1%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
MR QLVCNGCR+ILVYPRGA NVCCA CN IT VPP GM+MSQLYCGGC TLLMY GAT
Sbjct: 1 MRSQLVCNGCRSILVYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCTTLLMYTRGAT 60
Query: 61 SVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVS 112
SVRCSCC+TI VPESNQV IHC NCRT LMYP+GA SVKCAIC YITN+S
Sbjct: 61 SVRCSCCHTINLVPESNQV--IHCANCRTTLMYPYGASSVKCAICCYITNIS 110
>Glyma15g22140.2
Length = 176
Score = 172 bits (435), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/114 (78%), Positives = 94/114 (82%), Gaps = 4/114 (3%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
M QLVCNGCRNILVYPRGA NVCCA CN +T VPP GM+MSQLYCGGC TLLMY GAT
Sbjct: 1 MGSQLVCNGCRNILVYPRGATNVCCALCNTVTSVPPPGMDMSQLYCGGCTTLLMYTRGAT 60
Query: 61 SVRCSCCNTITRVP--ESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVS 112
SVRCSCC+TI VP ESNQV IHC NCRT LMYP+GA SVKCAIC YITNVS
Sbjct: 61 SVRCSCCHTINLVPVLESNQV--IHCTNCRTTLMYPYGASSVKCAICRYITNVS 112
>Glyma15g22140.1
Length = 180
Score = 171 bits (434), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/114 (78%), Positives = 94/114 (82%), Gaps = 4/114 (3%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
M QLVCNGCRNILVYPRGA NVCCA CN +T VPP GM+MSQLYCGGC TLLMY GAT
Sbjct: 1 MGSQLVCNGCRNILVYPRGATNVCCALCNTVTSVPPPGMDMSQLYCGGCTTLLMYTRGAT 60
Query: 61 SVRCSCCNTITRVP--ESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNVS 112
SVRCSCC+TI VP ESNQV IHC NCRT LMYP+GA SVKCAIC YITNVS
Sbjct: 61 SVRCSCCHTINLVPVLESNQV--IHCTNCRTTLMYPYGASSVKCAICRYITNVS 112
>Glyma17g16600.4
Length = 145
Score = 148 bits (373), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 90/111 (81%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
++ QLVC+GCRN+LV+P GA +VCCA CN +T VPP G EM+QL CGGC TLLMY GAT
Sbjct: 22 VQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81
Query: 61 SVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNV 111
SV+CSCC+T+ E+NQV+H++CGNCR L Y +GA SVKCA+C+++T+V
Sbjct: 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSV 132
>Glyma05g23710.1
Length = 145
Score = 148 bits (373), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 90/111 (81%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
++ QLVC+GCRN+LV+P GA +VCCA CN +T VPP G EM+QL CGGC TLLMY GAT
Sbjct: 22 VQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81
Query: 61 SVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNV 111
SV+CSCC+T+ E+NQV+H++CGNCR L Y +GA SVKCA+C+++T+V
Sbjct: 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSV 132
>Glyma17g16600.3
Length = 150
Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 90/111 (81%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
++ QLVC+GCRN+LV+P GA +VCCA CN +T VPP G EM+QL CGGC TLLMY GAT
Sbjct: 22 VQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81
Query: 61 SVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNV 111
SV+CSCC+T+ E+NQV+H++CGNCR L Y +GA SVKCA+C+++T+V
Sbjct: 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSV 132
>Glyma01g40720.1
Length = 147
Score = 142 bits (359), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 85/108 (78%)
Query: 4 QLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATSVR 63
QLVC+GCRN+L+YP GA +VCCA CN +T VPP G EM+QL CGGC T LMY GATSV+
Sbjct: 27 QLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPGTEMAQLVCGGCHTFLMYIRGATSVQ 86
Query: 64 CSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNV 111
CSCC+T+ E+N V+H++CGNC+ L Y +GA SVKCA+C ++T+V
Sbjct: 87 CSCCHTVNLALEANLVAHVNCGNCKMLLRYQYGARSVKCAVCSFVTSV 134
>Glyma17g16600.1
Length = 150
Score = 140 bits (353), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 87/111 (78%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
++ QLVC+GCRN+LV+P GA +VCCA CN +T VPP G EM+QL CGGC TLLMY GAT
Sbjct: 22 VQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81
Query: 61 SVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNV 111
SV+CSCC+T+ E V+H++CGNCR L Y +GA SVKCA+C+++T+V
Sbjct: 82 SVQCSCCHTVNLALEGIVVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSV 132
>Glyma17g16600.2
Length = 106
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 59/75 (78%)
Query: 1 MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGAT 60
++ QLVC+GCRN+LV+P GA +VCCA CN +T VPP G EM+QL CGGC TLLMY GAT
Sbjct: 22 VQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81
Query: 61 SVRCSCCNTITRVPE 75
SV+CSCC+T+ E
Sbjct: 82 SVQCSCCHTVNLALE 96
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 42 SQLYCGGCRTLLMYANGATSVRCSCCNTITRV-PESNQVSHIHCGNCRTALMYPHGALSV 100
SQL C GCR LL++ GATSV C+ CN +T V P +++ + CG C T LMY GA SV
Sbjct: 24 SQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
Query: 101 KCAICHYI 108
+C+ CH +
Sbjct: 84 QCSCCHTV 91
>Glyma05g23710.2
Length = 123
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 4 QLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATSVR 63
QLVC+GCRN+LV+P GA +VCCA CN +T VPP G EM+QL CGGC TLLMY GATSV+
Sbjct: 25 QLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQ 84
Query: 64 CSCCNTITRVPE 75
CSCC+T+ E
Sbjct: 85 CSCCHTVNLALE 96
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 42 SQLYCGGCRTLLMYANGATSVRCSCCNTITRV-PESNQVSHIHCGNCRTALMYPHGALSV 100
SQL C GCR LL++ GATSV C+ CN +T V P +++ + CG C T LMY GA SV
Sbjct: 24 SQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
Query: 101 KCAICHYI 108
+C+ CH +
Sbjct: 84 QCSCCHTV 91
>Glyma07g31600.1
Length = 128
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 42 SQLYCGGCRTLLMYANGATSVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVK 101
+Q+ CG CR LL Y GA V+CSCC T+ V E++QV + CG+C LMYP+GA V+
Sbjct: 36 AQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGASQVR 95
Query: 102 CAICHYITNV 111
C+ C ++T +
Sbjct: 96 CSSCRFVTEI 105
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 4 QLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATSVR 63
Q+VC CR +L YPRGA +V C+ C + V A ++ Q+ CG C LLMY GA+ VR
Sbjct: 37 QMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEAD-QVGQVKCGSCAVLLMYPYGASQVR 95
Query: 64 CSCCNTITRVPESNQ 78
CS C +T + N+
Sbjct: 96 CSSCRFVTEIGAHNK 110
>Glyma18g35280.1
Length = 31
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/31 (87%), Positives = 28/31 (90%)
Query: 39 MEMSQLYCGGCRTLLMYANGATSVRCSCCNT 69
MEMSQLYCGGCRTLLMY G TSVRCSCC+T
Sbjct: 1 MEMSQLYCGGCRTLLMYTRGTTSVRCSCCHT 31