Miyakogusa Predicted Gene
- Lj6g3v1078320.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1078320.3 tr|A9T0I3|A9T0I3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_234584,25.75,3e-18,Reticulon,Reticulon; seg,NULL;
UNKNOWN PROTEIN,NULL; RETICULON,Reticulon,CUFF.58986.3
(409 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma17g08250.1 502 e-142
Glyma06g26810.1 490 e-138
Glyma02g36430.1 448 e-126
Glyma13g37070.1 149 7e-36
Glyma06g44420.1 147 2e-35
Glyma12g33360.1 145 7e-35
Glyma06g44420.2 135 6e-32
Glyma12g13340.1 105 7e-23
>Glyma17g08250.1
Length = 609
Score = 502 bits (1292), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/388 (66%), Positives = 293/388 (75%), Gaps = 38/388 (9%)
Query: 19 SFDVKEISIPESKVVKEPENSKVSVNEPDKKMVISXXXXXXXXXXXXXXXXXXXXXXXXX 78
SFDVKEIS+PESKVV E E +V VN K+ +++
Sbjct: 252 SFDVKEISVPESKVVNETERKEV-VNVAAKQKIVN------------------------- 285
Query: 79 XIESEPKKVVSAHMRFHHRNERKPVSVPVALKPSPTVRRNSTIYQNFSEPKSIPKAEEYY 138
E EPKKVVS + +FH +NER PVSVP+++KPS +R+ STI+QNFS+ SIPKAEEY
Sbjct: 286 --EPEPKKVVSTNRQFHQKNER-PVSVPISVKPSLPIRKLSTIHQNFSKADSIPKAEEYC 342
Query: 139 GDSVPPCFPQTQSKLQSLVDLIMWRDFSRXXXXXXXXXXXXXXXXYAKDINLSLISVISY 198
FPQ+Q+KLQSLVDLIMWRD SR YAKDINLSLISV+SY
Sbjct: 343 S------FPQSQNKLQSLVDLIMWRDISRSAFIFGIGTFAIVLSSYAKDINLSLISVMSY 396
Query: 199 IGLVYLAVIFLYRALICRGVIEVEDSNYVLREDDAIWMLRLILPYLNEFLSRLKALFSGD 258
IGLVYLAVIFLYR+LICRGVI+VED+NYVLRE++AIW+L+LILPYLNEFLS+L+A+FSGD
Sbjct: 397 IGLVYLAVIFLYRSLICRGVIDVEDTNYVLREEEAIWVLKLILPYLNEFLSKLRAMFSGD 456
Query: 259 PGTTIKLAVLLFVLARCGSFITIWKMAKFGFFGVFTVPKICSSYSAQLTAYANFWIRRFR 318
PGTTIKLAVLLFVLARCGS+ITIWKMAKFGFFGVFTVPKICSSYSAQLTA+ANFWIRRFR
Sbjct: 457 PGTTIKLAVLLFVLARCGSYITIWKMAKFGFFGVFTVPKICSSYSAQLTAFANFWIRRFR 516
Query: 319 DAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHYLVRXXXXXXXXXX 378
DAWDSC+HKKAVALGIFGLVWNLSSVVARIW+VFVLFVAFRYYQQHYLVR
Sbjct: 517 DAWDSCSHKKAVALGIFGLVWNLSSVVARIWSVFVLFVAFRYYQQHYLVREELVENEAGC 576
Query: 379 XXTWQEPVGVR---QKQGRAANIVGTNK 403
TWQEP GV+ Q+Q I T K
Sbjct: 577 DETWQEPAGVKVGMQRQQSTHKIFETQK 604
>Glyma06g26810.1
Length = 605
Score = 490 bits (1261), Expect = e-138, Method: Compositional matrix adjust.
Identities = 259/397 (65%), Positives = 287/397 (72%), Gaps = 40/397 (10%)
Query: 22 VKEISIPESKV---VKEPENS------------KVSVNEPDKKMVISXXXXXXXXXXXXX 66
VKEISIPE KV VKEPE++ KV VNEP+KK+V+
Sbjct: 229 VKEISIPEYKVEVAVKEPESNDEVVVVENEQGKKVVVNEPEKKVVVVVVNEQEPTKILK- 287
Query: 67 XXXXXXXXXXXXXIESEPKKVVSAHMRFHHRNERKPVSVPVALKPSPTVRRNSTIYQNFS 126
E EPKK+++ +R P+SVP+A+K SPT+RRNST +QNFS
Sbjct: 288 --------------EQEPKKILN-----EPEPKRVPISVPLAMKQSPTIRRNSTSHQNFS 328
Query: 127 EPKSIPKAEEYYGDSVPPCFPQTQSKLQSLVDLIMWRDFSRXXXXXXXXXXXXXXXXYAK 186
+ SIPKA + CFPQTQSKLQSLV+LIMWRD SR YAK
Sbjct: 329 KTNSIPKATTEH-----RCFPQTQSKLQSLVELIMWRDVSRSAFVFGFGSFIIVSSSYAK 383
Query: 187 DINLSLISVISYIGLVYLAVIFLYRALICRGVIEVEDSNYVLREDDAIWMLRLILPYLNE 246
DINLS+ISV+SYI LVYLAVIFLYR+LICRG+I VEDSNYV+ E+DAIWML+LILPYLNE
Sbjct: 384 DINLSIISVMSYISLVYLAVIFLYRSLICRGIINVEDSNYVVGEEDAIWMLKLILPYLNE 443
Query: 247 FLSRLKALFSGDPGTTIKLAVLLFVLARCGSFITIWKMAKFGFFGVFTVPKICSSYSAQL 306
FLS+LKALFSGDPGTTIKLAVLLFVLARCGS+IT+WKMAKFGFFGVFTVPKICSSYSAQL
Sbjct: 444 FLSKLKALFSGDPGTTIKLAVLLFVLARCGSYITVWKMAKFGFFGVFTVPKICSSYSAQL 503
Query: 307 TAYANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHYL 366
T Y NFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLF AFRYYQQHYL
Sbjct: 504 TEYGNFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFAAFRYYQQHYL 563
Query: 367 VRXXXXXXXXXXXXTWQEPVGVRQKQGRAANIVGTNK 403
VR TWQ+PVGVR KQG A N TNK
Sbjct: 564 VRDEWGEDEAGCDETWQDPVGVRPKQGPATNFSDTNK 600
>Glyma02g36430.1
Length = 362
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/388 (62%), Positives = 270/388 (69%), Gaps = 68/388 (17%)
Query: 19 SFDVKEISIPESKVVKEPENSKVSVNEPDKKMVISXXXXXXXXXXXXXXXXXXXXXXXXX 78
SFDVKEIS+PESKVV EPE +V VN P K+ +++
Sbjct: 35 SFDVKEISVPESKVVNEPERKEV-VNVPAKQKIVN------------------------- 68
Query: 79 XIESEPKKVVSAHMRFHHRNERKPVSVPVALKPSPTVRRNSTIYQNFSEPKSIPKAEEYY 138
E EPKK+ STI+QNFS+ SIPKAEEYY
Sbjct: 69 --EPEPKKL-------------------------------STIHQNFSKADSIPKAEEYY 95
Query: 139 GDSVPPCFPQTQSKLQSLVDLIMWRDFSRXXXXXXXXXXXXXXXXYAKDINLSLISVISY 198
CFPQ+Q+KLQSLVDLIMWR+ SR YAKDINLSLISV+SY
Sbjct: 96 ------CFPQSQNKLQSLVDLIMWREVSRSAFIFGIGTFTIVSSSYAKDINLSLISVMSY 149
Query: 199 IGLVYLAVIFLYRALICRGVIEVEDSNYVLREDDAIWMLRLILPYLNEFLSRLKALFSGD 258
IGLVYLAVIFLYR+LICRGVI+V+D+NYVL E++AIW+LRLILPYLNEFLS+L+A+FSGD
Sbjct: 150 IGLVYLAVIFLYRSLICRGVIDVDDTNYVLGEEEAIWVLRLILPYLNEFLSKLRAMFSGD 209
Query: 259 PGTTIKLAVLLFVLARCGSFITIWKMAKFGFFGVFTVPKICSSYSAQLTAYANFWIRRFR 318
PGTTIKLAVLLFVLARCGS ITIWKMAKFGFFGVFT PKICSSYSAQLTA+ANFWIRRFR
Sbjct: 210 PGTTIKLAVLLFVLARCGSSITIWKMAKFGFFGVFTGPKICSSYSAQLTAFANFWIRRFR 269
Query: 319 DAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHYLVRXXXXXXXXXX 378
DAW SC+HKKAVALGIFGLVWNLSSVVARIW+VFVLFVAFRYYQQHYLVR
Sbjct: 270 DAWVSCSHKKAVALGIFGLVWNLSSVVARIWSVFVLFVAFRYYQQHYLVRDGWVEDVAGC 329
Query: 379 XXTWQEPVGVR---QKQGRAANIVGTNK 403
TWQEPVGV+ Q+Q I T K
Sbjct: 330 DETWQEPVGVKVGMQRQQSTYKIFETQK 357
>Glyma13g37070.1
Length = 390
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 140/273 (51%), Gaps = 22/273 (8%)
Query: 117 RNSTIYQNFSEPKS---IPKAEEYYGDSVPPCFPQTQSKL----------QSLVDLIMWR 163
++ST + +P++ + ++ +SVPP P +S+ Q + DLIMW+
Sbjct: 79 KDSTFVEEVGKPRTRRQTARTKKEKPNSVPPSTPSPKSEEENGGDLDHVGQVVSDLIMWK 138
Query: 164 DFSRXXXXXXXXXXXXXXXXYAKDINLSLISVISYIGLVY--------LAVIFLYRALIC 215
D S+ + + +N S+ S +S +G++ L+ +F +L
Sbjct: 139 DASKSTFWFGFCSLCLLSSCFTQGLNFSVFSALSQLGILLSGGVMLQALSCVFCDWSLCF 198
Query: 216 RGVIEVEDSNYVLREDDAIWMLRLILPYLNEFLSRLKALFSGDPGTTIKLAVLLFVLARC 275
R +E E L EDD + + +LILP LN +SR++ALFSG+P T+K+ L + A
Sbjct: 199 RNEVE-EKREIKLTEDDILRLAKLILPALNFAISRMRALFSGEPSMTLKVVPFLLLGAEY 257
Query: 276 GSFITIWKMAKFGFFGVFTVPKICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVALGIF 335
G ITI ++ GF F+VPK+ SSY+ Q+ A D W +CTHKK V
Sbjct: 258 GHLITIRRLCAIGFVVSFSVPKLYSSYTVQINQRAEGLKSWLLDTWSACTHKKKVMASAL 317
Query: 336 GLVWNLSSVVARIWAVFVLFVAFRYYQQHYLVR 368
WNLSS+ RI+ VF+L V FRY +QH +++
Sbjct: 318 MTFWNLSSIKTRIFTVFILLVLFRYLRQHVVLQ 350
>Glyma06g44420.1
Length = 430
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 1/209 (0%)
Query: 158 DLIMWRDFSRXXXXXXXXXXXXXXXXYAKDINLSLISVISYIGLVYLAVIFLYRALICRG 217
DLIMW+D S+ + K +N S+ S IS + ++ L V F ++ R
Sbjct: 180 DLIMWKDVSKSTLWFGLGCLCFLSSCFTKGVNFSIFSAISRLAILLLGVSFFSNSVCQRN 239
Query: 218 VIEVEDSNYVLREDDAIWMLRLILPYLNEFLSRLKALFSGDPGTTIKLAVLLFVLARCGS 277
+E + S L+EDD + + +LILP LN +S+ + LFSG+P T+K+A L + A G
Sbjct: 240 QVE-KRSFAKLKEDDILHLAKLILPALNFAISKTRELFSGEPCMTLKVAPFLLLGAEYGH 298
Query: 278 FITIWKMAKFGFFGVFTVPKICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVALGIFGL 337
ITIW++ GFF F+VP++ S YSAQ+ R D W +CTHKK V +
Sbjct: 299 LITIWRLCAIGFFVSFSVPRLYSCYSAQINLRVECLKLRLLDTWSACTHKKIVIASVLIA 358
Query: 338 VWNLSSVVARIWAVFVLFVAFRYYQQHYL 366
WNLS++ RI+ F+L V RY+++ +
Sbjct: 359 FWNLSTIKTRIFTAFILLVILRYFRETIM 387
>Glyma12g33360.1
Length = 395
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 126/244 (51%), Gaps = 19/244 (7%)
Query: 140 DSVPPCFPQTQSKL----------QSLVDLIMWRDFSRXXXXXXXXXXXXXXXXYAKDIN 189
+S PP P +S+ Q + DLIMW++ S+ + + +N
Sbjct: 116 NSAPPSTPSPKSEEENGGDFDRVGQVVSDLIMWKNSSKSTFWFGFGSLCLVSSCFTQGLN 175
Query: 190 LSLISVISYIGLVYLAVIFLYRALICRGVIEVEDSNYVLREDDAIWMLRLILPYLNEFLS 249
S+ S +S +G++ V F ++ R +E E L+EDD + +LILP LN LS
Sbjct: 176 FSIFSALSQLGILLSGVSFFSNSICQRNEVE-EKREIKLKEDDISRLAKLILPALNFALS 234
Query: 250 RLKALFSGDPGTTIKLAVLLFVLARCGSFITIWKMAKFGFFGVFTVPKICSSYSAQ---- 305
R++ALFSG+P T+K+ L + A G ITIW++ GF F+VPK+ S Y+AQ
Sbjct: 235 RMRALFSGEPSMTLKVVPFLLLGAEYGHLITIWRLCAIGFLVSFSVPKLYSCYTAQINQR 294
Query: 306 -LTAYANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQH 364
+T W+ D W +CT KK V WNLSS+ RI+ VF+L V RY +QH
Sbjct: 295 GMTEGLKSWL---LDTWSACTRKKKVMASALMAFWNLSSIKTRIFTVFILLVLCRYLRQH 351
Query: 365 YLVR 368
+++
Sbjct: 352 VVLQ 355
>Glyma06g44420.2
Length = 248
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 111/203 (54%), Gaps = 1/203 (0%)
Query: 161 MWRDFSRXXXXXXXXXXXXXXXXYAKDINLSLISVISYIGLVYLAVIFLYRALICRGVIE 220
MW+D S+ + K +N S+ S IS + ++ L V F ++ R +E
Sbjct: 1 MWKDVSKSTLWFGLGCLCFLSSCFTKGVNFSIFSAISRLAILLLGVSFFSNSVCQRNQVE 60
Query: 221 VEDSNYVLREDDAIWMLRLILPYLNEFLSRLKALFSGDPGTTIKLAVLLFVLARCGSFIT 280
+ S L+EDD + + +LILP LN +S+ + LFSG+P T+K+A L + A G IT
Sbjct: 61 -KRSFAKLKEDDILHLAKLILPALNFAISKTRELFSGEPCMTLKVAPFLLLGAEYGHLIT 119
Query: 281 IWKMAKFGFFGVFTVPKICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVALGIFGLVWN 340
IW++ GFF F+VP++ S YSAQ+ R D W +CTHKK V + WN
Sbjct: 120 IWRLCAIGFFVSFSVPRLYSCYSAQINLRVECLKLRLLDTWSACTHKKIVIASVLIAFWN 179
Query: 341 LSSVVARIWAVFVLFVAFRYYQQ 363
LS++ RI+ F+L V RY+++
Sbjct: 180 LSTIKTRIFTAFILLVILRYFRE 202
>Glyma12g13340.1
Length = 252
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 26/225 (11%)
Query: 156 LVDLIMWRDFSRXXXXXXXXXXXXXXXXYAKDINLSLISVISYIGLVYLAVIFLYRALIC 215
+ DLIMW+D S+ + K +N S+ S IS + ++ L V F ++
Sbjct: 11 ITDLIMWKDVSKSTLWFVFGCLCFLSSCFTKGVNFSIFSAISRLAILLLGVSFFSNSVCQ 70
Query: 216 RGVIEVEDSNYV-LREDDAIWMLRLILPYLNEFLSRLKALFSGDPGTTIKL----AVLLF 270
R +VE ++ L+EDD + + +LILP LN +S+ + LFSG+P T+K +L F
Sbjct: 71 RN--QVEKRSFAKLKEDDILHLAKLILPALNFAISKTRELFSGEPCMTLKFIPLDCILTF 128
Query: 271 VL---------ARCGSFITIWKMAKFGFFGVFTVPKICSSYSAQLTAYANFWIRRFRDAW 321
+L A G ITIW++ GFF F VPK+ S YSAQ+ +R +
Sbjct: 129 LLRVAPFLLLGAEYGHLITIWRLCVIGFFVSFNVPKLYSCYSAQIN-------QRVLEI- 180
Query: 322 DSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHYL 366
+ H + + I WNLS++ RI+ F+L V RY++Q+ +
Sbjct: 181 EIVGHMECLQTHI--AFWNLSTIKTRIFTAFILLVILRYFRQNIM 223