Miyakogusa Predicted Gene

Lj6g3v1078200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1078200.1 Non Chatacterized Hit- tr|B9FM15|B9FM15_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,33.94,0.0000008,RRM,RNA recognition motif domain; seg,NULL; RNA
recognition motif,RNA recognition motif domain; FAMI,CUFF.58970.1
         (329 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g04980.4                                                        50   4e-06
Glyma02g04980.1                                                        50   5e-06
Glyma16g23010.1                                                        49   7e-06
Glyma16g23010.6                                                        49   8e-06
Glyma10g41320.1                                                        49   9e-06

>Glyma02g04980.4 
          Length = 246

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query: 128 SVYVDGLSDRITLIKLKTIFGKAGRVKDVXXXXXXXXXXXXXYGFVRFQNDEEAWRAIRT 187
           ++YV GLS R+T   L+  F K G+V                + FV  ++ E+A R I+ 
Sbjct: 74  TLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAERCIKY 133

Query: 188 LNGLRIDGNYLVVKRANPKQATT 210
           LN   ++G Y+ V+R+  K+A T
Sbjct: 134 LNQSVLEGRYITVERSRRKRART 156


>Glyma02g04980.1 
          Length = 285

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query: 128 SVYVDGLSDRITLIKLKTIFGKAGRVKDVXXXXXXXXXXXXXYGFVRFQNDEEAWRAIRT 187
           ++YV GLS R+T   L+  F K G+V                + FV  ++ E+A R I+ 
Sbjct: 74  TLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAERCIKY 133

Query: 188 LNGLRIDGNYLVVKRANPKQATT 210
           LN   ++G Y+ V+R+  K+A T
Sbjct: 134 LNQSVLEGRYITVERSRRKRART 156


>Glyma16g23010.1 
          Length = 240

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%)

Query: 128 SVYVDGLSDRITLIKLKTIFGKAGRVKDVXXXXXXXXXXXXXYGFVRFQNDEEAWRAIRT 187
           ++YV GLS R+T   L+  F K G+V                + FV  ++ E+A R I+ 
Sbjct: 72  TLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAERCIKY 131

Query: 188 LNGLRIDGNYLVVKRANPKQATT 210
           LN   ++G Y+ ++R+  K+A T
Sbjct: 132 LNQSVLEGRYITIERSRRKRART 154


>Glyma16g23010.6 
          Length = 232

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%)

Query: 128 SVYVDGLSDRITLIKLKTIFGKAGRVKDVXXXXXXXXXXXXXYGFVRFQNDEEAWRAIRT 187
           ++YV GLS R+T   L+  F K G+V                + FV  ++ E+A R I+ 
Sbjct: 64  TLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAERCIKY 123

Query: 188 LNGLRIDGNYLVVKRANPKQATT 210
           LN   ++G Y+ ++R+  K+A T
Sbjct: 124 LNQSVLEGRYITIERSRRKRART 146


>Glyma10g41320.1 
          Length = 191

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 119 DVKTQGQSFSVYVDGLSDRITLIKLKTIFGKAGRVKDVXXXXXXXXXXXXXYGFVRFQND 178
           DV+  G +  +YV GLS RIT   L   F K G+V D              +GFV  + +
Sbjct: 40  DVENPGNN--LYVTGLSTRITDSDLHKYFSKEGKVVDCHLVKDPHTKESRGFGFVTMETN 97

Query: 179 EEAWRAIRTLNGLRIDGNYLVVKRANPKQATTNSVPRKIWRPKKEQKQA 227
           ++A   I+ LN    +G  + V++A   +  T   P K   P+ ++ Q 
Sbjct: 98  DDAECCIKYLNRSVFEGRLITVEKAKRNRGRT-PTPGKYCGPRDKRGQG 145