Miyakogusa Predicted Gene
- Lj6g3v1008190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1008190.1 Non Chatacterized Hit- tr|C5X783|C5X783_SORBI
Putative uncharacterized protein Sb02g000870
OS=Sorghu,30,4e-19,DNA_pol_A_exo1,3'-5' exonuclease domain; SUBFAMILY
NOT NAMED,NULL; 3-5 EXONUCLEASE,NULL; 3'-5' exonu,CUFF.58760.1
(212 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma07g17250.1 175 4e-44
Glyma07g17310.1 167 1e-41
Glyma18g42030.1 148 5e-36
Glyma12g21130.1 123 2e-28
Glyma18g42050.1 122 3e-28
Glyma18g42040.1 120 1e-27
Glyma18g00520.1 95 5e-20
Glyma18g00520.2 95 6e-20
Glyma18g42010.1 95 6e-20
Glyma15g14810.1 84 1e-16
Glyma11g36610.1 80 1e-15
Glyma09g03870.1 72 6e-13
Glyma10g28980.1 67 1e-11
Glyma20g38330.1 64 8e-11
>Glyma07g17250.1
Length = 238
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 118/183 (64%), Gaps = 4/183 (2%)
Query: 27 IGTIVTSCPTLAASWIKSHLQASRH-HQK---VVGLDIEWRPSFTRGVQNPVATIQLCIK 82
I T++TS P+L SWI + L+ +H HQ+ VGLDIEWRP+ R +QNPVAT+QLC+
Sbjct: 52 IYTLLTSDPSLVDSWISTVLRDHQHQHQQRVLTVGLDIEWRPNTQRNMQNPVATLQLCVA 111
Query: 83 HCCLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDAKKLLEDYGLLIANFADIGHMAA 142
CL+FQ+ +P IP +L L +PNIT+ GV I+ D +KLLEDY L +AN D+ AA
Sbjct: 112 ERCLVFQILHSPSIPPSLVSFLADPNITFVGVGIQEDMEKLLEDYNLNVANVRDLRSFAA 171
Query: 143 EEFDEKGFKRAGLKTLVENLIGEEMDKPKHVALSNWEAKELTCVQAHYACADAYYSYKLG 202
E + KRAGLK+L ++G E+ KPK V S W+ LT Q YA DA+ SY++
Sbjct: 172 ERLGDLELKRAGLKSLGLRVLGLEVAKPKRVTRSRWDNPWLTAQQVQYAAVDAFLSYEID 231
Query: 203 KGL 205
+ L
Sbjct: 232 RRL 234
>Glyma07g17310.1
Length = 203
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 120/191 (62%), Gaps = 2/191 (1%)
Query: 18 HRVAIHNRVIGTIVTSCPTLAASWIKSHLQASRHHQKVVGLDIEWRPSFTRGVQ--NPVA 75
+ V + N I T+VT+ P+ SW+ S+++ + +VGLD+EW+P+ +Q NPVA
Sbjct: 12 YEVTMGNYTIQTLVTASPSQVGSWLSSNIRNNADDLMIVGLDVEWKPNTRPNMQPPNPVA 71
Query: 76 TIQLCIKHCCLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDAKKLLEDYGLLIANFA 135
T+QLCI H CLIFQ+ AP IP+AL L NP++ + GV I+ DA KLL DY L + N
Sbjct: 72 TLQLCIGHNCLIFQILYAPLIPRALSSFLNNPDVIFVGVGIQEDADKLLRDYNLRVTNVG 131
Query: 136 DIGHMAAEEFDEKGFKRAGLKTLVENLIGEEMDKPKHVALSNWEAKELTCVQAHYACADA 195
++ +AAEE + AGL L ++G E+DKP++V +S W+ + LT Q YA DA
Sbjct: 132 ELRSLAAEELQVFQLQWAGLAALGHYVLGFEIDKPENVTMSRWDNRYLTDEQVAYAAIDA 191
Query: 196 YYSYKLGKGLV 206
+ S ++G+ L+
Sbjct: 192 FVSGEIGRALI 202
>Glyma18g42030.1
Length = 162
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 99/155 (63%), Gaps = 4/155 (2%)
Query: 55 VVGLDIEWRPSFTRGVQ-NPVATIQLCIKHCCLIFQLYRAPCIPKALYKALYNPNITYTG 113
+VGLD+EWRP++ Q NPVAT+QLC H CLIFQ+ AP IP AL L NPNIT+ G
Sbjct: 1 MVGLDVEWRPNYQPNTQPNPVATLQLCTGHRCLIFQIIHAPSIPAALISFLANPNITFFG 60
Query: 114 VKIRGDAKKLLEDYGLLIANFADIGHMAAEEFDEKGF---KRAGLKTLVENLIGEEMDKP 170
V IR DA+KLL DY L +AN D+ +A E + +AGL TL +++G ++KP
Sbjct: 61 VGIRADAEKLLVDYNLHVANVRDLRPLAVERLSRAFYPDVSQAGLATLARHVLGVAVEKP 120
Query: 171 KHVALSNWEAKELTCVQAHYACADAYYSYKLGKGL 205
+ + S W+ + LT Q YA DA+ SY++G+ L
Sbjct: 121 QWITRSRWDDRRLTKEQVQYATIDAFLSYEIGRQL 155
>Glyma12g21130.1
Length = 208
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 108/202 (53%), Gaps = 4/202 (1%)
Query: 6 DKHPPCKTPAT-VHRVAIHNRVIGTIVTSCPTLAASWIKSHLQASRHHQKVVGLDIEWRP 64
+ +P P+T ++ V+ I T +T + WI+ Q++VGLD EW
Sbjct: 7 NNNPIVFDPSTSMYLVSCDGLTIETTITDKSGIVDKWIQVVSSTYAGKQRIVGLDTEWTT 66
Query: 65 SFTRGVQNPVATIQLCIKHCCLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDAKKLL 124
+ + + VA +QLCI++ CLI QL+ IP++L L + N + GV + D + L
Sbjct: 67 A--KKPKMKVAILQLCIENKCLIIQLFHMDNIPQSLRSFLMDSNFEFVGVGVINDLRMLK 124
Query: 125 EDYGLLIANFADIGHMAAEEFDEKGFKRAGLKTLVENLIGEEMDKPKHVALSNWEAKELT 184
DYGL D+ +A E++ + LK L + L+G EM+K K V S W++KELT
Sbjct: 125 NDYGLECNKGIDVSLLAKEKWPHR-ISSGALKYLAKELVGLEMEKSKAVCTSEWQSKELT 183
Query: 185 CVQAHYACADAYYSYKLGKGLV 206
Q YAC DAY S+K+GK ++
Sbjct: 184 QTQIEYACIDAYASFKIGKMIL 205
>Glyma18g42050.1
Length = 140
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 82/136 (60%)
Query: 70 VQNPVATIQLCIKHCCLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDAKKLLEDYGL 129
+ NPVAT+ LC+ H CLIFQ+ AP +P+AL L +PN+T+ GV I G KL +DY L
Sbjct: 1 MNNPVATLHLCVDHRCLIFQILHAPSVPRALISFLASPNVTFVGVGIHGHVDKLFQDYNL 60
Query: 130 LIANFADIGHMAAEEFDEKGFKRAGLKTLVENLIGEEMDKPKHVALSNWEAKELTCVQAH 189
+AN D+ +AAEE + AGL TL +G E+ P+++ S W+ + LT Q
Sbjct: 61 RVANVRDLRSLAAEELNVPELYWAGLDTLGLCTLGFEVSTPRYITTSRWDNRSLTEEQVE 120
Query: 190 YACADAYYSYKLGKGL 205
YA DA+ S +G+ L
Sbjct: 121 YAAVDAFVSCGVGRTL 136
>Glyma18g42040.1
Length = 145
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 83/136 (61%), Gaps = 2/136 (1%)
Query: 54 KVVGLDIEWRPSFTRGVQ--NPVATIQLCIKHCCLIFQLYRAPCIPKALYKALYNPNITY 111
K+VGLD+EWRP+ Q NPVAT+QLCI H CLIFQ+ A +P+AL L N ++ +
Sbjct: 10 KIVGLDVEWRPNTQSNSQQPNPVATLQLCIDHNCLIFQILHATLVPRALTSFLANRHVKF 69
Query: 112 TGVKIRGDAKKLLEDYGLLIANFADIGHMAAEEFDEKGFKRAGLKTLVENLIGEEMDKPK 171
GV +R DA+KLL DY L +AN D+ +A ++ AGL L +G +++KP
Sbjct: 70 VGVGVRDDAQKLLRDYNLHVANAVDLRSLAEQKLKVFWLGSAGLAALGRFFLGVDINKPH 129
Query: 172 HVALSNWEAKELTCVQ 187
H+ S W+ + LT Q
Sbjct: 130 HITTSLWDNRFLTHEQ 145
>Glyma18g00520.1
Length = 292
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 10/198 (5%)
Query: 8 HP-PCKTPATVHRVAIHNRVIGTIVTSCPTLAASWIKSHLQ--ASRHHQKVVGLDIEWRP 64
HP PC + T+ + ++ + AA+ + LQ + Q +G DIEW+P
Sbjct: 71 HPRPCDSRMTLPVMKFSGQISYSRTFDAVEKAATKLLQILQEKTTDMMQTAIGFDIEWKP 130
Query: 65 SFTRGVQ-NPVATIQLC--IKHCCLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDAK 121
+F +GV VA +Q+C +HC ++ ++ IP+ L L +P + G I GDA
Sbjct: 131 TFRKGVPPGKVAVMQICGDTRHCHVLHLIHSG--IPQNLQLLLEDPTVLKVGAGIDGDAV 188
Query: 122 KLLEDYGLLIANFADIGHMAAEEFDEKGFKRAGLKTLVENLIGEEMDKPKHVALSNWEAK 181
K+ DY + + D+ A ++ G + GL +L E L+ +++ KP + L NWEA
Sbjct: 189 KVFRDYNISVKGVTDLSFHANQKLG--GDHKWGLASLTEKLLSKQLKKPNKIRLGNWEAP 246
Query: 182 ELTCVQAHYACADAYYSY 199
L+ Q YA DA+ S+
Sbjct: 247 VLSKEQLEYAATDAFASW 264
>Glyma18g00520.2
Length = 214
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 7/150 (4%)
Query: 53 QKVVGLDIEWRPSFTRGVQ-NPVATIQLC--IKHCCLIFQLYRAPCIPKALYKALYNPNI 109
Q +G DIEW+P+F +GV VA +Q+C +HC ++ ++ IP+ L L +P +
Sbjct: 41 QTAIGFDIEWKPTFRKGVPPGKVAVMQICGDTRHCHVLHLIHSG--IPQNLQLLLEDPTV 98
Query: 110 TYTGVKIRGDAKKLLEDYGLLIANFADIGHMAAEEFDEKGFKRAGLKTLVENLIGEEMDK 169
G I GDA K+ DY + + D+ A ++ G + GL +L E L+ +++ K
Sbjct: 99 LKVGAGIDGDAVKVFRDYNISVKGVTDLSFHANQKLG--GDHKWGLASLTEKLLSKQLKK 156
Query: 170 PKHVALSNWEAKELTCVQAHYACADAYYSY 199
P + L NWEA L+ Q YA DA+ S+
Sbjct: 157 PNKIRLGNWEAPVLSKEQLEYAATDAFASW 186
>Glyma18g42010.1
Length = 115
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 64/110 (58%)
Query: 96 IPKALYKALYNPNITYTGVKIRGDAKKLLEDYGLLIANFADIGHMAAEEFDEKGFKRAGL 155
+P + +PNIT GV IR D +KLL+DY L + N D+ AAE+ + G KRAGL
Sbjct: 2 LPSQPLSSPSDPNITVVGVGIREDVEKLLKDYNLNVVNVRDLRSFAAEKLGDLGLKRAGL 61
Query: 156 KTLVENLIGEEMDKPKHVALSNWEAKELTCVQAHYACADAYYSYKLGKGL 205
K+L +G E+ KPK V S W+ LT Q YA DA+ SY+ G+ L
Sbjct: 62 KSLALRGMGLEVAKPKRVTRSRWDNPWLTAEQVQYAAVDAFLSYETGRRL 111
>Glyma15g14810.1
Length = 211
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 20/203 (9%)
Query: 16 TVHRVAIHNRV-----IGT----IVTSCPTLAASWIKSHL----QASRHHQKVVGLDIEW 62
T H+++ + + +GT VT+ ++ W+ S L Q R + VVGL ++W
Sbjct: 5 TTHKISFQHELHEIHTVGTELSVTVTAKASVVREWLSSRLYFRQQYVRRKRLVVGLGVQW 64
Query: 63 RPSFTRGVQNPVATIQLCIKHCCLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDAKK 122
T G +P T+QLC+ CLIFQL A +PK L L + + T+ G D +K
Sbjct: 65 ----TGGSDSPADTLQLCVGRRCLIFQLAHAKSVPKKLRTFLLDASHTFVGFWNHLDRRK 120
Query: 123 L-LEDYGL-LIANFADIGHMAAEEFDEKGFKRAGLKTLVENLIGEEMDKPKHVALSNWEA 180
L ++GL ++ + D+ A E D +A ++ +VE +G ++++ +++S+W
Sbjct: 121 LESSEHGLEMVRDPLDLRRYAKTE-DGDDLTQASVEEIVEQCLGFDVEQRSEISMSDWND 179
Query: 181 KELTCVQAHYACADAYYSYKLGK 203
+ L+ Q YA DA ++ +G+
Sbjct: 180 EYLSDDQIAYATIDARCAFLIGR 202
>Glyma11g36610.1
Length = 215
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 21/152 (13%)
Query: 53 QKVVGLDIEWRPSFTRGVQ-NPVATIQLC--IKHCCLIFQLYRAPCIPKALYKALYNPNI 109
Q +G DIEW+P+F +GV VA +Q+ +HC L+ + +P +
Sbjct: 40 QIAIGFDIEWKPTFRKGVPPGKVAVMQIYGDTRHCHLLLE----------------DPTV 83
Query: 110 TYTGVKIRGDAKKLLEDYGLLIANFADIGHMAAEEFDEKGFKRAGLKTLVENLIGEEMDK 169
G I GDA K+ DY + + D+ A + G + GL +L E L+ +++ K
Sbjct: 84 LKVGAGIDGDAVKVFRDYNISVKGVTDLSFHANRKLG--GDHKWGLASLTEKLLSKQLKK 141
Query: 170 PKHVALSNWEAKELTCVQAHYACADAYYSYKL 201
P + L NWE L+ Q YA DA+ S+ L
Sbjct: 142 PNKIRLGNWETPVLSKEQLEYAATDAFASWYL 173
>Glyma09g03870.1
Length = 197
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 21/192 (10%)
Query: 17 VHRVAIHNRVIGTIVTSCPTLAASWIKSHLQASRH----HQKVVGLDIEWRPSFTRGVQN 72
++ V + I VT+ ++ W+ S L +R+ + VVGL ++W TRG +
Sbjct: 15 IYTVCLAENYITVTVTASASVVKRWLSSTLYFNRYFVDQERLVVGLGVQW----TRGGHD 70
Query: 73 PVA-TIQLCIKHCCLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDAKKLLEDYGLLI 131
P T+QLC+ CLIFQL A +P++L L +P+ T+ G D KL L
Sbjct: 71 PPPDTLQLCVGRRCLIFQLAHADYVPESLRTFLNDPSHTFVGFWNHSDRLKLACSEHEL- 129
Query: 132 ANFADIGHMAAEEFDEK----GFKRAGLKTLVENLIGEEMDKPKHVALSNWEAKELTCVQ 187
MA + D + R ++ +V +G + + + +++S W A+ L+ Q
Sbjct: 130 -------EMAMDPLDLRLCFESLTRDSVEAIVAKCLGYRVPQRRDISVSAWYAEYLSNDQ 182
Query: 188 AHYACADAYYSY 199
YA DA+ ++
Sbjct: 183 VAYATVDAFCAF 194
>Glyma10g28980.1
Length = 566
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 22/167 (13%)
Query: 42 IKSHLQASRHHQ--KVVGLDIEWRPSFTRGVQ-NPVATIQLCIKHCCLIFQLYRA----- 93
++ L A+RH + KV+GLD EW+P++ +G + N V+ +Q+ + IF L +
Sbjct: 363 VEGLLDATRHIEGFKVIGLDCEWKPNYIKGSKPNKVSIMQIASEDSAFIFDLIKLHKEVP 422
Query: 94 PCIPKALYKALYNPNITYTGVKIRGDAKKLLEDYGLL--IANFA---DIGHMAAEEFDEK 148
+ L + L +P I G + DAK+L Y L N+ DI ++ E
Sbjct: 423 DILDNCLSRILLSPRILKLGYNFQCDAKQLAYSYEELRCFKNYEMLLDIQNVFKE----- 477
Query: 149 GFKRAGLKTLVENLIGEEMDKPKHVALSNWEAKELTCVQAHYACADA 195
R GL L E ++G ++K + SNWE + LT Q YA DA
Sbjct: 478 --PRGGLAGLTEKILGASLNKTRRN--SNWEQRPLTPHQLEYAALDA 520
>Glyma20g38330.1
Length = 571
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 22/167 (13%)
Query: 42 IKSHLQASRHHQ--KVVGLDIEWRPSFTRGVQ-NPVATIQLCIKHCCLIFQLYRA----- 93
++ L A+RH + KV+GLD EW+P++ +G + N V+ +Q+ + IF L +
Sbjct: 363 VEGLLDATRHIKGFKVIGLDCEWKPNYVKGSKPNKVSIMQIASEKMVFIFDLIKLHKEVP 422
Query: 94 PCIPKALYKALYNPNITYTGVKIRGDAKKLLEDYGLL--IANFA---DIGHMAAEEFDEK 148
+ L L +P I G + DAK+L Y L N+ DI ++ E
Sbjct: 423 DILDDCLSCILLSPRILKLGYNFQCDAKQLAYSYEELRCFKNYEMLLDIQNVFKE----- 477
Query: 149 GFKRAGLKTLVENLIGEEMDKPKHVALSNWEAKELTCVQAHYACADA 195
R GL L E ++G ++K + SNWE + LT Q YA DA
Sbjct: 478 --PRGGLAGLAEKILGASLNKTRRN--SNWEQRPLTPNQLEYAALDA 520