Miyakogusa Predicted Gene

Lj6g3v0856590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0856590.1 tr|A9RTR3|A9RTR3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_70439
,47.27,0.0000002,E set domains,Immunoglobulin E-set; CBM_48,Glycoside
hydrolase, family 13, N-terminal; 1,4-ALPHA-GLU,CUFF.58399.1
         (226 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g10380.1                                                       384   e-107
Glyma03g35020.1                                                        48   8e-06
Glyma03g35020.2                                                        48   8e-06

>Glyma18g10380.1 
          Length = 563

 Score =  384 bits (986), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 173/213 (81%), Positives = 193/213 (90%)

Query: 2   NLKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGDINGWSPTENCAREHYFGHDDF 61
           N   +ASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGD NGWSPTE+CAREHYFGHDDF
Sbjct: 139 NFMILASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGDFNGWSPTEDCAREHYFGHDDF 198

Query: 62  GYWFIILQDKLREGEKPDKLYFQQYNYVDDYDKGDSGVTIEEIFKKMNDKYWQPGEDRYL 121
           GYWFIILQDKLREGE+PDK YFQ YNYVDDYDKGDSGV++EE+ KK N+KYWQPGEDR++
Sbjct: 199 GYWFIILQDKLREGEEPDKYYFQMYNYVDDYDKGDSGVSVEELIKKANEKYWQPGEDRFV 258

Query: 122 KNRFEGPVKLYEEIFGPNGPQTLEELGDIPDAETRYKEWAAKHGPSRYAVIDSGKEYDVF 181
            NRFEGPVKLYE+IFGPNGPQT+E++ DIPD ETRYK WAA+HGPS  A IDSGKEYD++
Sbjct: 259 NNRFEGPVKLYEQIFGPNGPQTIEDIPDIPDPETRYKAWAAEHGPSPTAAIDSGKEYDIY 318

Query: 182 NVRVDPGWHERVRALEPPIAYWLETRKGRKAWL 214
           NV VDP W E++RALEPP+ YW ETRKGRKAW+
Sbjct: 319 NVIVDPQWQEKIRALEPPVLYWFETRKGRKAWM 351


>Glyma03g35020.1 
          Length = 870

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 3   LKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGDINGWSPTENCAREHYFGHDDFG 62
           L   + G+E  G  R     + Y EWAPGA+  A+IGD N W+P  +   +     ++FG
Sbjct: 202 LDTFSRGYEKFGFQRSATG-ITYREWAPGAKSAALIGDFNNWNPNADVMTK-----NEFG 255

Query: 63  YWFIILQDKLREGEKP 78
            W I L + + +G  P
Sbjct: 256 VWEIFLPNNV-DGSPP 270


>Glyma03g35020.2 
          Length = 821

 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 3   LKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAIIGDINGWSPTENCAREHYFGHDDFG 62
           L   + G+E  G  R     + Y EWAPGA+  A+IGD N W+P  +   +     ++FG
Sbjct: 202 LDTFSRGYEKFGFQRSATG-ITYREWAPGAKSAALIGDFNNWNPNADVMTK-----NEFG 255

Query: 63  YWFIILQDKLREGEKP 78
            W I L + + +G  P
Sbjct: 256 VWEIFLPNNV-DGSPP 270