Miyakogusa Predicted Gene

Lj6g3v0727740.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0727740.2 Non Chatacterized Hit- tr|I1N089|I1N089_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.3490 PE=,84.28,0,no
description,NULL; no description,DNA-directed RNA polymerase, insert
domain; RNA_POL_D_30KD,DNA-d,CUFF.58190.2
         (387 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g44480.1                                                       652   0.0  
Glyma18g08360.1                                                       651   0.0  
Glyma20g02360.1                                                       135   1e-31
Glyma07g34610.1                                                       133   4e-31
Glyma18g17160.1                                                       118   1e-26

>Glyma08g44480.1 
          Length = 393

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/369 (84%), Positives = 342/369 (92%), Gaps = 1/369 (0%)

Query: 20  LDYIMNLESVPQKLPPHLELLRTRVLCNVDAPQHTDTIQYSGAYAALGVDNSLRFDDFCK 79
           LD+I++L++VP KLPPHLEL +TRVLCN DAP HTDT+QYSGAYA +GVDNS+R D FC+
Sbjct: 25  LDFILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAIMGVDNSVRLDSFCE 84

Query: 80  NFKVEVKRLTDDEMEFDMIGIDPAIANAFRRILISEVPTMALERVYIANNTSLVQDEVLA 139
           NFKVEVKRLTD ++EFDMIGIDPAIANAFRRILI+EVPTMA+ERVYIANNTS+VQDEVL+
Sbjct: 85  NFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLS 144

Query: 140 HRLGLVPINADPRLFEYPDNAGEN-NEKNSIVFKLHVHCKKGQPRITVLSDQLKWLPNGS 198
           HRLGL+PI ADPRLFEYP+NAG++ NEKN+IVFKLHV C+ GQPRITV SD+LKWLPNGS
Sbjct: 145 HRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGS 204

Query: 199 ELIAEDTKPNTDSKPKTFTSFTCSQDSLPEFSSNPPGPRYLDIIIDKLGPGQEIELEAHA 258
           EL  ED KPN  SKPKTFTSFTCSQDSLPEFS+N  G  Y DII+ KLGPGQEIELEAHA
Sbjct: 205 ELPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHA 264

Query: 259 VKGIGKTHAKWSPVSTAWYRMLPEVVLLEDVQDELAEELKNKCPLKVFDIEDIGKGKRRA 318
           VKG GKTHAKWSPV+T WYRMLPEVVLL+DV+DELAEELKNKCP+ VFDIEDIGKGKRRA
Sbjct: 265 VKGTGKTHAKWSPVATTWYRMLPEVVLLKDVEDELAEELKNKCPVNVFDIEDIGKGKRRA 324

Query: 319 KVARPRDCTLCRECIRGGKEWEDRVSLRRVKDHFIFTVESTGALPPELLFTEAVKILEDK 378
           KVARPRDCTLCRECIRGGKEWEDRVSLRRVK+HFIFT+ESTGALPPE+LFTEAVKILEDK
Sbjct: 325 KVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDK 384

Query: 379 CERVITELS 387
           CERVITELS
Sbjct: 385 CERVITELS 393


>Glyma18g08360.1 
          Length = 388

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/369 (84%), Positives = 342/369 (92%), Gaps = 1/369 (0%)

Query: 20  LDYIMNLESVPQKLPPHLELLRTRVLCNVDAPQHTDTIQYSGAYAALGVDNSLRFDDFCK 79
           LD+I++L++VP KLPPHLEL +TRVLCN DAP HTDT+QYSGAYA LGVDNS+R D FC+
Sbjct: 20  LDFILSLDNVPSKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAILGVDNSVRLDSFCE 79

Query: 80  NFKVEVKRLTDDEMEFDMIGIDPAIANAFRRILISEVPTMALERVYIANNTSLVQDEVLA 139
           NFKVEVKRLTD ++EFDMIGIDPAIANAFRRILI+EVPTMA+ERVYIANNTS+VQDEVL+
Sbjct: 80  NFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLS 139

Query: 140 HRLGLVPINADPRLFEYPDNAGEN-NEKNSIVFKLHVHCKKGQPRITVLSDQLKWLPNGS 198
           HRLGL+PI ADPRLFEYP+NAG++ NEKN+IVFKLHV C+ GQPRITV SD+LKWLPNGS
Sbjct: 140 HRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGS 199

Query: 199 ELIAEDTKPNTDSKPKTFTSFTCSQDSLPEFSSNPPGPRYLDIIIDKLGPGQEIELEAHA 258
           EL  ED KPN  SKPKTFTSFTCSQDSLPEFS+N  G  Y DII+ KLGPGQEIELEAHA
Sbjct: 200 ELPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELEAHA 259

Query: 259 VKGIGKTHAKWSPVSTAWYRMLPEVVLLEDVQDELAEELKNKCPLKVFDIEDIGKGKRRA 318
           VKGIGKTHAKWSPV+TAWYRMLPEVVLLE V+DELAEELKNKCP+ VFDIEDIGKGKRRA
Sbjct: 260 VKGIGKTHAKWSPVATAWYRMLPEVVLLEAVEDELAEELKNKCPVNVFDIEDIGKGKRRA 319

Query: 319 KVARPRDCTLCRECIRGGKEWEDRVSLRRVKDHFIFTVESTGALPPELLFTEAVKILEDK 378
           KVARPRDCTLCRECIRGGKEWEDRVSLRRVK+HFI T+ESTGALPPE+LFTEAVKILEDK
Sbjct: 320 KVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFICTIESTGALPPEVLFTEAVKILEDK 379

Query: 379 CERVITELS 387
           CERVITELS
Sbjct: 380 CERVITELS 388


>Glyma20g02360.1 
          Length = 320

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 160/318 (50%), Gaps = 39/318 (12%)

Query: 77  FCKNFKVEVKRLTDDEMEFDMIGIDPAIANAFRRILISEVPTMALERVYIANNTSLVQDE 136
           + +  +V+++ L DD  +F++   D +IANA RR++I+EVPT+A++ V I  N+S++ DE
Sbjct: 7   YARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDE 66

Query: 137 VLAHRLGLVPINADPRL---FEYPDNAGENN---EKNSIVFKLHVHCKKGQPRITVLSDQ 190
            +AHRLGL+P+ ++  +   F    +A + +   E  S+ F L V C   Q       D 
Sbjct: 67  FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKDL 126

Query: 191 LKWLPNGSELIAEDTKPNTDSKPKTFTSFTCSQDSLPEFSSNPPGPRYLDIIIDKLGPGQ 250
               P  S              P  F+         P  + +P   R   III KL  GQ
Sbjct: 127 YSSDPTVS--------------PVDFSD--------PSATDSPDNNR--GIIIVKLRRGQ 162

Query: 251 EIELEAHAVKGIGKTHAKWSPVSTAWYRMLPEVVLLEDVQDELAEELK----NKCPLKVF 306
           E++L A A KGIGK HAKWSP +T  +   PE+ + ED+ + L  E K    +  P +VF
Sbjct: 163 ELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVF 222

Query: 307 DIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWE--DRVSLRRVKDHFIFTVESTGALPP 364
           +I+ +    ++  V      T   E ++  +       V +   +D FIFTVESTGA+  
Sbjct: 223 EIDPV---TQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKA 279

Query: 365 ELLFTEAVKILEDKCERV 382
             L   A++IL+ K + V
Sbjct: 280 SQLVLNAIEILKQKLDAV 297


>Glyma07g34610.1 
          Length = 319

 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 158/312 (50%), Gaps = 38/312 (12%)

Query: 82  KVEVKRLTDDEMEFDMIGIDPAIANAFRRILISEVPTMALERVYIANNTSLVQDEVLAHR 141
           +V+++ L DD  +F++   D +IANA RR++I+EVPT+A++ V I  N+S++ DE +AHR
Sbjct: 12  RVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHR 71

Query: 142 LGLVPINADPRL---FEYPDNAGENN---EKNSIVFKLHVHCKKGQPRITVLSDQLKWLP 195
           LGL+P+ ++  +   F    +A + +   E  S+ F L V C   Q       D     P
Sbjct: 72  LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKDLYSSDP 131

Query: 196 NGSELIAEDTKPNTDSKPKTFTSFTCSQDSLPEFSSNPPGPRYLDIIIDKLGPGQEIELE 255
             S              P  F+  + +       S N  G     III KL  GQE++L 
Sbjct: 132 TVS--------------PVDFSDPSATD------SDNNRG-----IIIVKLRRGQELKLR 166

Query: 256 AHAVKGIGKTHAKWSPVSTAWYRMLPEVVLLEDVQDELAEELK----NKCPLKVFDIEDI 311
           A A KGIGK HAKWSP +T  +   PE+ + ED+ + L  E K    +  P +VF+I+ +
Sbjct: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPV 226

Query: 312 GKGKRRAKV-ARPRDCTLCRECIRGGKEWEDRVSLRRVKDHFIFTVESTGALPPELLFTE 370
            +        A   D  + ++    GK     +  R  +D FIFTVESTGA+    L   
Sbjct: 227 TQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEIIAR--QDSFIFTVESTGAVKASQLVLN 284

Query: 371 AVKILEDKCERV 382
           A++IL+ K + V
Sbjct: 285 AIEILKQKLDAV 296


>Glyma18g17160.1 
          Length = 105

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 64/70 (91%), Gaps = 1/70 (1%)

Query: 116 VPTMALERVYIANNTSLVQDEVLAHRLGLVPINADPRLFEYPDNAGEN-NEKNSIVFKLH 174
           VPTMA+ERVYI NNTS+VQDEVL+HRLGL+PI ADP+LFEY +NAG++ NEKN+IVFKLH
Sbjct: 1   VPTMAIERVYITNNTSVVQDEVLSHRLGLIPIRADPKLFEYLENAGDDKNEKNTIVFKLH 60

Query: 175 VHCKKGQPRI 184
           V C+ GQPRI
Sbjct: 61  VRCQVGQPRI 70