Miyakogusa Predicted Gene

Lj6g3v0657890.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0657890.2 tr|I1LN46|I1LN46_SOYBN DNA topoisomerase
OS=Glycine max GN=Gma.49661 PE=3 SV=1,90.88,0,PRTPISMRASEI,DNA
topoisomerase, type IA; TOPOISOMERASE_I_PROK,DNA topoisomerase, type
IA, active sit,CUFF.58128.2
         (669 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g36800.1                                                      1227   0.0  
Glyma14g05950.1                                                       243   4e-64
Glyma06g16200.1                                                       197   4e-50
Glyma1546s00200.1                                                     113   8e-25

>Glyma11g36800.1 
          Length = 863

 Score = 1227 bits (3174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/658 (88%), Positives = 605/658 (91%), Gaps = 1/658 (0%)

Query: 13  SYGPCQTPTLGFCVQRYLQINTFKPEKFWSVNPYIVHSGYEIQLEWQRSKLFDINVATMF 72
           SYGPCQTPTLGFCVQRYLQINTFKPEKFWS++PYI+ +GYEIQLEWQR KLFDINVA MF
Sbjct: 206 SYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQNGYEIQLEWQRGKLFDINVAMMF 265

Query: 73  QKLVAEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPHMAMQLAERLYTQGF 132
           QKLV+EDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGP MAMQLAERLYTQGF
Sbjct: 266 QKLVSEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGF 325

Query: 133 ISYPRTESTAYPPSFDFRGALSAQANNPTWGNYVEGLLTNGYLKPRLGTDVGDHPPITPM 192
           ISYPRTESTAYPPSFDFRG LSAQ NNPTWGNYV+GLLTNGY KPRLGTDVGDHPPITPM
Sbjct: 326 ISYPRTESTAYPPSFDFRGVLSAQTNNPTWGNYVQGLLTNGYQKPRLGTDVGDHPPITPM 385

Query: 193 RPAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYARRKVEFSIGGESFHCTGQHVITKGFT 252
           R AAEDMLGNDAWKLYQYICQHFIGTVSPDCKY RRKVEFSIGGESFHCTGQHV+TKGFT
Sbjct: 386 RSAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYIRRKVEFSIGGESFHCTGQHVVTKGFT 445

Query: 253 AIMPWLAINDKNIPSFIKGQKIEVSKVELYEGTTTPPDYLTESELISLMEKNGIGTDASI 312
           AIMPWLAINDKNIPSFIKGQKIEVSK+ELYEG+T+PPD+LTESELISLMEKNGIGTDASI
Sbjct: 446 AIMPWLAINDKNIPSFIKGQKIEVSKLELYEGSTSPPDFLTESELISLMEKNGIGTDASI 505

Query: 313 PVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQSIDPDLCLPDIRSFIEQQITLIAKG 372
           PVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQ+IDPDLCLPDIRSFIEQQITLIAKG
Sbjct: 506 PVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQTIDPDLCLPDIRSFIEQQITLIAKG 565

Query: 373 QIDHHRVVQHVIQQFKQKFCYFVKKIEAMDALFEAQFSTLVDSGRILSKCGKCLRYMKYI 432
           Q+DH  VVQHVIQQF QKF YFVKKIE MDALFEAQFSTL DSGRILSKCGKCLRYMK+I
Sbjct: 566 QVDHRHVVQHVIQQFTQKFSYFVKKIEDMDALFEAQFSTLTDSGRILSKCGKCLRYMKFI 625

Query: 433 SAQPSRLYCGICEEVYYLPQKGTIKLYKELSCPLDNFELLLCSM-GPDGKSFPLCPYCYS 491
           S QPSRLYCG CEEVYYLPQKGTIKLYKELSCPLDNFELL+CSM GPDGKSFPLCPYCY 
Sbjct: 626 STQPSRLYCGTCEEVYYLPQKGTIKLYKELSCPLDNFELLICSMPGPDGKSFPLCPYCYI 685

Query: 492 NPPFEGIEALINTAKTSTSGKIGKGAGMPCILCPHPTCPNSLVSQGVCACPECSGTLVLD 551
           NPPFEGIE LINTAKT TSGKIGKGAGMPC LCPHPTCPNSLVSQGVCACPECSGTLVLD
Sbjct: 686 NPPFEGIETLINTAKTGTSGKIGKGAGMPCNLCPHPTCPNSLVSQGVCACPECSGTLVLD 745

Query: 552 PVSAPKWRLCCNMCNCLVFLAQGAHRISTTKERCPECDSSIIEVDFNKKATPLEDGSTLH 611
           PVSAP+W+LCCNMCNCLVFLAQGAHRISTTK+RCPECDSSIIEVDFNKK TPLEDG+TLH
Sbjct: 746 PVSAPRWKLCCNMCNCLVFLAQGAHRISTTKDRCPECDSSIIEVDFNKKTTPLEDGATLH 805

Query: 612 RGCILCDELLHSLVEMKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVDPKMSFRDF 669
            GCILCDELLHSLVEMKH                             M+DPKMSFRDF
Sbjct: 806 HGCILCDELLHSLVEMKHGRSFRHMSSRGRGRGARKGGRGRGRGGGKMMDPKMSFRDF 863


>Glyma14g05950.1 
          Length = 131

 Score =  243 bits (621), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 117/131 (89%), Positives = 121/131 (92%)

Query: 327 VQAGRKLVPTTLGITLVRGYQSIDPDLCLPDIRSFIEQQITLIAKGQIDHHRVVQHVIQQ 386
           VQAGR+LVPTTLGITLVRGYQ+IDPDLCLPD+RSFIEQQITLIAKGQ+DH  VVQHVIQQ
Sbjct: 1   VQAGRELVPTTLGITLVRGYQTIDPDLCLPDVRSFIEQQITLIAKGQVDHGHVVQHVIQQ 60

Query: 387 FKQKFCYFVKKIEAMDALFEAQFSTLVDSGRILSKCGKCLRYMKYISAQPSRLYCGICEE 446
           F QKF YFVKKIE MDALFEAQFSTL DSGRILSKCGKCL YMKYI  QPSRLYCG CEE
Sbjct: 61  FTQKFSYFVKKIEHMDALFEAQFSTLTDSGRILSKCGKCLSYMKYIFTQPSRLYCGTCEE 120

Query: 447 VYYLPQKGTIK 457
           VYYLPQKGTIK
Sbjct: 121 VYYLPQKGTIK 131


>Glyma06g16200.1 
          Length = 603

 Score =  197 bits (500), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 171/338 (50%), Gaps = 18/338 (5%)

Query: 12  FSYGPCQTPTLGFCVQRYLQINTFKPEKFWSVNPYIVHSGYE--IQLEWQRSKLFDINVA 69
            SYGPCQ PTLGF V+R+ +I   +PE+FWS+     H   E   +  W R +LFD   A
Sbjct: 212 LSYGPCQFPTLGFVVERFWEIQAHEPEEFWSI--ICSHESKEGTAEFSWMRGRLFDYTCA 269

Query: 70  TMFQKLVAEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPHMAMQLAERLYT 129
            +  ++  E       E +  ++ K  P  LNT+ L K AS          M++AE LY 
Sbjct: 270 VIIYEMCVE-------EPTATEKPKYPPFPLNTIELQKRASRYFRMSSDHTMKVAEELYQ 322

Query: 130 QGFISYPRTESTAYPPSFDFRGALSAQANNPTWGNYVEGLL---TNGYLKPRLG-TDVGD 185
            GFISYPRTE+ ++ P  D    +  Q  +P WG Y + L+      +  PR G  D   
Sbjct: 323 AGFISYPRTETDSFSPGTDLHTIVQEQQGHPEWGIYAQRLMDPEAGLWRNPRGGGHDDKA 382

Query: 186 HPPITPMR-PAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYARRKVEFSIGGESFHCTGQ 244
           HPPI P +    E     D  KLY+ + +HF+  VS     A   VE +I GE F   G+
Sbjct: 383 HPPIYPTKFSTGESGWSQDHRKLYELVVRHFLACVSKPALGAETTVEINIAGELFSACGR 442

Query: 245 HVITKGFTAIMPWLAINDKNIPSFIKGQKIEVSKVELYEGTTTPPDYLTESELISLM--E 302
            ++ K +  +  + +     IP++  GQ+   +K+ L  G T PP  L+E++L+S M  E
Sbjct: 443 VILEKNYLDVYRYESWGGSMIPTYTNGQQFNPTKLTLESGVTRPPPLLSEADLLSYMDRE 502

Query: 303 KNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGI 340
           +  IGTDA++  HI  + +R+Y    +  +  PT L I
Sbjct: 503 EAKIGTDATMQDHIKKMLDRSYATKDSSTRFTPTNLVI 540


>Glyma1546s00200.1 
          Length = 66

 Score =  113 bits (282), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 57/65 (87%)

Query: 393 YFVKKIEAMDALFEAQFSTLVDSGRILSKCGKCLRYMKYISAQPSRLYCGICEEVYYLPQ 452
           +++ +IE MDALFEAQFSTL DSGRILSKCGK L YMKYI  QPSRLYCG CEEVYYLPQ
Sbjct: 2   FYLAQIEHMDALFEAQFSTLTDSGRILSKCGKWLSYMKYIFTQPSRLYCGTCEEVYYLPQ 61

Query: 453 KGTIK 457
           KGTIK
Sbjct: 62  KGTIK 66