Miyakogusa Predicted Gene

Lj6g3v0609650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0609650.1 tr|B9HP64|B9HP64_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_650159 PE=4
SV=1,67.95,2e-19,TSP9,Thylakoid soluble phosphoprotein TSP9; seg,NULL;
TSP9-like,NULL,gene.g64534.t1.1
         (91 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g07310.1                                                        94   2e-20

>Glyma18g07310.1 
          Length = 92

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 61/93 (65%), Gaps = 3/93 (3%)

Query: 1  MASLMMSFXXXXXXXXXXXXXXXXXXXKEEKSILDWILGGMQKEDQLLETDPILKKVEEK 60
          MAS++MSF                   KEEK +LDWILGG+QKEDQLLETDPILKKVEEK
Sbjct: 1  MASIIMSFAPATGRVFAATAAKGAGGSKEEKGLLDWILGGLQKEDQLLETDPILKKVEEK 60

Query: 61 SGGTTS--GRGKNTVAMPQXXXXXXXXXLFAKN 91
          +GGTTS  GR KN+VA+PQ         LFAKN
Sbjct: 61 NGGTTSNTGRNKNSVAVPQ-KKKGGFGGLFAKN 92