Miyakogusa Predicted Gene
- Lj6g3v0551680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0551680.1 Non Chatacterized Hit- tr|C0PMW8|C0PMW8_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,36.87,2e-18,coiled-coil,NULL; seg,NULL,CUFF.58024.1
(342 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma18g01880.1 344 8e-95
Glyma11g37980.1 281 8e-76
Glyma11g11580.1 57 3e-08
Glyma11g01130.1 53 6e-07
>Glyma18g01880.1
Length = 535
Score = 344 bits (882), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 202/368 (54%), Positives = 227/368 (61%), Gaps = 36/368 (9%)
Query: 1 MDDLALALKEVATEANQVKAKLTLSQVELEHTKGDVERWRAMXXXXXXXXXXXXDVTRKE 60
MDDLA ALKEVATEANQVKAKLTLSQVELEHTKGD ERWR M + TRKE
Sbjct: 178 MDDLAFALKEVATEANQVKAKLTLSQVELEHTKGDAERWRTMLGTTEERYKEILETTRKE 237
Query: 61 ADRFKNTXXXXXXXXXXXXXXWNGKETEFVNCIRRAEEERLLAQKESNRIVDLLXXXXXX 120
ADR+KNT WN KETEFVNCIRRAEEERLLAQ+ES R+++L
Sbjct: 238 ADRYKNTAERLRLEAEESLLAWNDKETEFVNCIRRAEEERLLAQQESTRVLELFKEAENK 297
Query: 121 XXXXXXXXXXLRDILKQXXXXXXXXXXXXXXXXXXXXRLQDSLTLLVQENEMLKIHEAAS 180
LRDILKQ RLQDSL LLV ENEMLKIHEAAS
Sbjct: 298 TRVSKEENQKLRDILKQALNESNVAKEAAEIAKAENARLQDSLNLLVHENEMLKIHEAAS 357
Query: 181 FENIKELKRMLSESSIKEFKNDDIDRLLDKE------------SGKKTKAQHSHSSTEKD 228
FENI+ELKRMLSESS+KEFKN+D+D+ KE G+K KA H++ D
Sbjct: 358 FENIRELKRMLSESSMKEFKNEDMDKPSTKEGSKEDNNNNKESGGRKAKA---HNNNSID 414
Query: 229 SKNLNKTFSFNLKDMITP--HNKQQHKVGGSEEANNKETKDDDTLRGSIF---------- 276
SK+L+KTFSFNLK+MITP HNKQQH EEANNK+T DDDTLRGSIF
Sbjct: 415 SKSLHKTFSFNLKEMITPHNHNKQQH---SKEEANNKDT-DDDTLRGSIFDEVDSSSDSE 470
Query: 277 --DEVDSSDSESRHDEMAEYFDHLDDAPESDXXXXXXXXXXXXFGDLIRRKGYHYHQKEP 334
+VD +S +D + E H DD P SD FGDLIRR+GYH H+KEP
Sbjct: 471 SRPDVDMGNSPDDYDHLGE--SHFDD-PHSDSNSRKRRALLRRFGDLIRRRGYHNHRKEP 527
Query: 335 SNEENLQT 342
SNEE+LQT
Sbjct: 528 SNEEHLQT 535
>Glyma11g37980.1
Length = 480
Score = 281 bits (719), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 184/355 (51%), Positives = 210/355 (59%), Gaps = 31/355 (8%)
Query: 1 MDDLALALKEVATEANQVKAKLTLSQVELEHTKGDVERWRAMXXXXXXXXXXXXDVTRKE 60
MDDLA ALKEVATEANQVKAKLTLSQVELE TK D ERWRAM + TRK
Sbjct: 126 MDDLAFALKEVATEANQVKAKLTLSQVELEQTKCDAERWRAMLGTTEERYKEILETTRKA 185
Query: 61 ADRFKNTXXXXXXXXXXXXXXWNGKETEFVNCIRRAEEERLLAQKESNRIVDLLXXXXXX 120
++R+KNT WN KETEFVNCIRRAEEERLLA +ES R++DL
Sbjct: 186 SERYKNTAERLRLEAEEFLSAWNDKETEFVNCIRRAEEERLLATQESTRVLDLFKEAENK 245
Query: 121 XXXXXXXXXXLRDILKQXXXXXXXXXXXXXXXXXXXXRLQDSLTLLVQENEMLKIHEAAS 180
LRDILKQ RLQDSL LL ENEMLKIHEAAS
Sbjct: 246 TRVSKEENQKLRDILKQALNESNVAKEAAEIAKAENARLQDSLNLLFHENEMLKIHEAAS 305
Query: 181 FENIKELKRMLSESSIKEFKNDDI---------------DRLLDKESGKKTKAQHSHSST 225
FENI+ELKRMLSESS+KEFKN+DI + +KESG+K KA H++S
Sbjct: 306 FENIRELKRMLSESSMKEFKNEDIMEKPSTKDQGSKDQDNSNNNKESGRKAKA-HNNSID 364
Query: 226 EKDSKNLNKTFSFNLKDMITPHN-KQQHKVG------GSEEANNKETKDDDTLRGSIFDE 278
KDSK++NKTFSFNLK+MITPHN KQQ + NNK+ +DDTLRGSIFDE
Sbjct: 365 HKDSKSMNKTFSFNLKEMITPHNHKQQQHISKVGGNNEEVNNNNKDIDNDDTLRGSIFDE 424
Query: 279 VDSSDSESRHDE----MAEYFDHLD----DAPESDXXXXXXXXXXXXFGDLIRRK 325
VDSS + + + FDHLD D P+SD FGDLIRR+
Sbjct: 425 VDSSSDSESCPDVDMGIPDDFDHLDESHFDDPQSDSNSRKRRALLRRFGDLIRRR 479
>Glyma11g11580.1
Length = 838
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 7/204 (3%)
Query: 1 MDDLALALKEVATEANQVKAKLTLSQVELEHTKGDVERWRAMXXXXXXXXXXXXDVTRKE 60
M+ LA AL EV+ EA + K L Q E E +E + + D R E
Sbjct: 445 MESLASALHEVSAEAREAKENLLNIQAESESYDAQIEDLKLVLKATNEKYKSMLDEARHE 504
Query: 61 ADRFKNTXXXXXXXXXXXXXXWNGKETEFVNCIRRAEEERLLAQKESNRIVDLLXXXXXX 120
D + W +E + V+CI++ EEE++ +KE R++ LL
Sbjct: 505 IDVLVCSIENSKSAFENSKAEWEQRELQLVSCIKKNEEEKVSLEKEIKRLLYLLKETEEE 564
Query: 121 XXXXXXXXXXLRDILKQXXXXXXXXXXXXXXXXXXXXRLQDS-------LTLLVQENEML 173
L++ LK+ +L+++ L + QEN+ L
Sbjct: 565 ANANREEEAQLKENLKEVEAEAIQLQEALKETTAENMKLKENLLDKENELQCMFQENDEL 624
Query: 174 KIHEAASFENIKELKRMLSESSIK 197
+I EA S + ++EL ++L E++ +
Sbjct: 625 RIREAESIKKVEELSKLLEEATTR 648
>Glyma11g01130.1
Length = 861
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 7/200 (3%)
Query: 1 MDDLALALKEVATEANQVKAKLTLSQVELEHTKGDVERWRAMXXXXXXXXXXXXDVTRKE 60
M+ LA AL EV+ EA K KL + VE E+ + +E + + + R E
Sbjct: 475 MESLASALHEVSAEARDSKEKLLANHVEHENYETQIEDLKLVLKATNEKYESMLNDARHE 534
Query: 61 ADRFKNTXXXXXXXXXXXXXXWNGKETEFVNCIRRAEEERLLAQKESNRIVDLLXXXXXX 120
D + W +E VNC++ EEE E NR++ LL
Sbjct: 535 IDTLTCSVENSKSNIENSKAEWEQREHHLVNCLKLTEEENSSLGNEINRLIRLLKDTEEE 594
Query: 121 XXXXXXXXXXLRDILKQXXXXXXXXXXXXXXXXXXXXRLQDSL-------TLLVQENEML 173
L++ LK+ +L++SL + QENE L
Sbjct: 595 ANAKREEEGQLKENLKEVEAEVIHLQEELKEAKAESMKLKESLLDKENEFQNVFQENEEL 654
Query: 174 KIHEAASFENIKELKRMLSE 193
++ E+ S + ++EL +ML E
Sbjct: 655 RLRESTSIKKVEELSKMLDE 674