Miyakogusa Predicted Gene

Lj6g3v0528510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0528510.1 tr|F2EJF8|F2EJF8_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,51.09,3e-19,Ribosomal
proteins S24e, L23 and L15e,Ribosomal protein L23/L15e core domain; no
description,Nucleot,CUFF.58011.1
         (111 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g31230.1                                                       131   1e-31
Glyma08g14420.1                                                       127   2e-30
Glyma18g02050.1                                                       114   2e-26
Glyma11g38120.1                                                        55   2e-08

>Glyma05g31230.1 
          Length = 97

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 78/97 (80%), Gaps = 1/97 (1%)

Query: 1  MTHIAYLPMIPIMPKTSS-DIKEISFKTLPSASKLEIKHVIESYYDLEVKKVRTLNMKGK 59
          M HI  LPM P+MP TSS DIKEI+FKT PSASK+EIK  +E++Y  EV+KVRTLNMKGK
Sbjct: 1  MAHITNLPMTPLMPSTSSNDIKEIAFKTAPSASKVEIKRFLETFYGFEVEKVRTLNMKGK 60

Query: 60 KKHSSGFLYAKPDYKKAYVTLKKPISLTQDIFPLRTT 96
          KK  +G L AKPDYKKAYVTLKKP+S +QD +  R+T
Sbjct: 61 KKRYAGSLVAKPDYKKAYVTLKKPLSFSQDPYHFRST 97


>Glyma08g14420.1 
          Length = 133

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 82/106 (77%), Gaps = 4/106 (3%)

Query: 1   MTHIAYLPMIPIMPKTSS--DIKEISFKTLPSASKLEIKHVIESYYDLEVKKVRTLNMKG 58
           M HI  LPM P+MP ++S  +IKEI+FKT PSASK+EIK  +E++Y  EV+KVRTLNMKG
Sbjct: 1   MAHITNLPMTPLMPASTSSNNIKEIAFKTAPSASKVEIKRFLETFYGFEVEKVRTLNMKG 60

Query: 59  KKKHSSGFLYAKPDYKKAYVTLKKPISLTQDIFPLRTTNAAKDDKK 104
           KKK  +G L AKPDYKKAYVTLKKP+S +Q+ +P  +T   +D KK
Sbjct: 61  KKKRYAGSLVAKPDYKKAYVTLKKPLSFSQNPYPFGST--VEDKKK 104


>Glyma18g02050.1 
          Length = 176

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 79/110 (71%), Gaps = 3/110 (2%)

Query: 1   MTHIAYLPMIPIMPKTSSDIKEISFKTLPSASKLEIKHVIESYYDLEVKKVRTLNMKGKK 60
           +   A LP+  +MP + ++I EI+ KT+PSA+K+EIK V++S Y  +V KVRTLNM+GKK
Sbjct: 9   VVQFANLPIKLLMPNSFTNIHEIALKTIPSATKIEIKRVLQSLYGFDVDKVRTLNMEGKK 68

Query: 61  KHSSGFLYAKPDYKKAYVTLKKPISLTQDIFPLRTTNAAKDDKKMVAASA 110
           K   G L AKPDYKKAYVTLK P+S++ D++P+R  +   +DKK +   A
Sbjct: 69  KKRGGLLIAKPDYKKAYVTLKTPLSISPDLYPIRIID---EDKKRINKQA 115


>Glyma11g38120.1 
          Length = 84

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 32/46 (69%)

Query: 26 KTLPSASKLEIKHVIESYYDLEVKKVRTLNMKGKKKHSSGFLYAKP 71
          +  PS +K+EIK V+ES Y  +V+KVRTLNM+GKKK   G L   P
Sbjct: 30 RNRPSVTKIEIKRVLESLYSFDVEKVRTLNMEGKKKKRGGLLIENP 75