Miyakogusa Predicted Gene
- Lj6g3v0437540.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0437540.1 tr|G7IP58|G7IP58_MEDTR F-box protein SKIP19
OS=Medicago truncatula GN=MTR_2g019060 PE=4
SV=1,43.51,3e-19,RNI-like,NULL; no description,NULL; N7-RELATED
PROTEIN,NULL; F-BOX/LEUCINE RICH REPEAT PROTEIN,NULL,CUFF.57878.1
(136 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma15g09890.1 122 1e-28
Glyma13g29200.1 119 1e-27
Glyma04g10850.2 58 4e-09
Glyma04g10850.1 58 4e-09
Glyma06g10680.3 57 5e-09
Glyma06g10680.2 57 5e-09
Glyma06g10680.1 57 5e-09
Glyma02g36660.2 54 4e-08
Glyma02g36660.1 54 5e-08
>Glyma15g09890.1
Length = 318
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 89/130 (68%), Gaps = 12/130 (9%)
Query: 1 MRGLK--GFECDDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSN 58
M+G + ECD+EAFAIA+TMP L HLQL GN+LTNEGLLAILDGCPHLESLDLR C N
Sbjct: 177 MKGYRRPHIECDEEAFAIAETMPTLHHLQLFGNKLTNEGLLAILDGCPHLESLDLRQCFN 236
Query: 59 VDLSGSLRERCLKQIKDLRLPEDLSEVSIYTEGGNEVESTDEDYQIYLRDYVDIDWANER 118
V+L+GSL +RC +QIK+LRLP D ++ + E + S DED DID+
Sbjct: 237 VNLAGSLGKRCAEQIKELRLPCDPTDDCPF-EADVDYGSLDEDSSA----ISDIDFL--- 288
Query: 119 ESTDEDYQIY 128
+D+DY Y
Sbjct: 289 --SDDDYDYY 296
>Glyma13g29200.1
Length = 311
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 86/122 (70%), Gaps = 9/122 (7%)
Query: 7 FECDDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLR 66
ECD+EAFAIA+TMP L HLQL GN+LTNEGLLAILDGCP LESLDLR C NV+L+GSL
Sbjct: 177 IECDEEAFAIAETMPGLHHLQLFGNKLTNEGLLAILDGCPLLESLDLRQCFNVNLAGSLG 236
Query: 67 ERCLKQIKDLRLPEDLSEVSIYTEGGNEVESTDEDYQIYLRDYVDIDWANERESTDEDYQ 126
+RC +QIK+LRLP D ++ + E + S DEDY + DID+ +D+DY
Sbjct: 237 KRCAEQIKELRLPCDPTDDYPF-EAEIDYGSLDEDYPSGIS---DIDFL-----SDDDYD 287
Query: 127 IY 128
Y
Sbjct: 288 YY 289
>Glyma04g10850.2
Length = 321
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 5 KGFECDDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGS 64
K F+ DDEA+AIA TMP+L HL++ + ++ G+L IL CP LE LD R C V L
Sbjct: 173 KPFQ-DDEAYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHM 231
Query: 65 LRERCLKQIKDL 76
++ ++K L
Sbjct: 232 FLKQKFPKLKVL 243
>Glyma04g10850.1
Length = 321
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 5 KGFECDDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGS 64
K F+ DDEA+AIA TMP+L HL++ + ++ G+L IL CP LE LD R C V L
Sbjct: 173 KPFQ-DDEAYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHM 231
Query: 65 LRERCLKQIKDL 76
++ ++K L
Sbjct: 232 FLKQKFPKLKVL 243
>Glyma06g10680.3
Length = 321
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 10 DDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLRERC 69
DDEA+AIA TMP+L HL++ + ++ G+L IL CP LE LD R C V L ++
Sbjct: 177 DDEAYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHMFLKQK 236
Query: 70 LKQIKDL 76
++K L
Sbjct: 237 FPKLKVL 243
>Glyma06g10680.2
Length = 321
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 10 DDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLRERC 69
DDEA+AIA TMP+L HL++ + ++ G+L IL CP LE LD R C V L ++
Sbjct: 177 DDEAYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHMFLKQK 236
Query: 70 LKQIKDL 76
++K L
Sbjct: 237 FPKLKVL 243
>Glyma06g10680.1
Length = 321
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 10 DDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNVDLSGSLRERC 69
DDEA+AIA TMP+L HL++ + ++ G+L IL CP LE LD R C V L ++
Sbjct: 177 DDEAYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHMFLKQK 236
Query: 70 LKQIKDL 76
++K L
Sbjct: 237 FPKLKVL 243
>Glyma02g36660.2
Length = 296
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 10 DDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNV---DLSGSLR 66
DDEA AIA +MP L L++ ++LT +GL +I GCP+LE LDL C+N+ D++ +
Sbjct: 195 DDEAAAIANSMPGLEQLEIRFSKLTAKGLNSICQGCPNLEFLDLSGCANLTSRDIANA-- 252
Query: 67 ERCLKQIKDLRLPEDLSEVSIY-TEGGNEVESTDEDYQ 103
L +K+++ P S++ TE DE +Q
Sbjct: 253 SSSLVHLKEIKKPNFYIPRSVFHTERYGHWSLYDERFQ 290
>Glyma02g36660.1
Length = 306
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 10 DDEAFAIAKTMPQLCHLQLLGNRLTNEGLLAILDGCPHLESLDLRVCSNV---DLSGSLR 66
DDEA AIA +MP L L++ ++LT +GL +I GCP+LE LDL C+N+ D++ +
Sbjct: 205 DDEAAAIANSMPGLEQLEIRFSKLTAKGLNSICQGCPNLEFLDLSGCANLTSRDIANA-- 262
Query: 67 ERCLKQIKDLRLPEDLSEVSIY-TEGGNEVESTDEDYQ 103
L +K+++ P S++ TE DE +Q
Sbjct: 263 SSSLVHLKEIKKPNFYIPRSVFHTERYGHWSLYDERFQ 300