Miyakogusa Predicted Gene

Lj6g3v0410450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0410450.1 tr|I0Z3L3|I0Z3L3_9CHLO TPR-like protein
OS=Coccomyxa subellipsoidea C-169 PE=4 SV=1,48,1e-17,KINESIN LIGHT
CHAIN,NULL; Tetratricopeptide repeats,Tetratricopeptide repeat;
TPR_12,NULL; TPR-like,,CUFF.57790.1
         (234 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g04680.1                                                       359   1e-99
Glyma11g33550.1                                                       198   4e-51

>Glyma18g04680.1 
          Length = 233

 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 173/229 (75%), Positives = 195/229 (85%), Gaps = 8/229 (3%)

Query: 1   MSLRVAAANLLKKFRFPSSRAFPASTVPTNSLPISFSGKVRLSHWYQTRAYS----CRDP 56
           MSLRVAA NLLKK RFP+S  FPASTV TN+    FSGK++LS WYQ   +      RDP
Sbjct: 1   MSLRVAAVNLLKKLRFPASHVFPASTVTTNA----FSGKLKLSRWYQAGEHGWRIDLRDP 56

Query: 57  CLWIVVSGYAAVTLGISASTVFAEDVSTETSIDNDSGDELNGFRKIEDGSVVSNTHTAKW 116
           CLWIV+SG+ A+TLGISASTVFAED +TE   DND G +L G RKIEDGSVVSN HTAKW
Sbjct: 57  CLWIVISGHVAMTLGISASTVFAEDATTEAYPDNDPGGDLIGLRKIEDGSVVSNIHTAKW 116

Query: 117 RIFTDKARDFFLQGKLDEAEKLFLSAVQEAKEGFGKQDPHVASACNNLAEFYRIRKEFDK 176
           R+FTDKAR+FFLQGKLDEAEKLFLSA++EAKEGFG++DPHVASACNNLAE YR++K FDK
Sbjct: 117 RVFTDKAREFFLQGKLDEAEKLFLSAIEEAKEGFGEKDPHVASACNNLAELYRVKKAFDK 176

Query: 177 AEPLYLEAINILEESFGPDDIRVGAAAHNLGQFYLGLRKLEKARLTYER 225
           AEPLYLEAINILEESFGPDD+RVG A HNLGQFYLG RKLE+AR++YER
Sbjct: 177 AEPLYLEAINILEESFGPDDVRVGVAVHNLGQFYLGQRKLEEARVSYER 225


>Glyma11g33550.1 
          Length = 214

 Score =  198 bits (504), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 135/218 (61%), Gaps = 24/218 (11%)

Query: 1   MSLRVAAANLLKKFRFPSSRAFPASTVPTNSLPISFSGKVRLSHWYQTRAYSCR----DP 56
           MSLRVAAA+LLKK RFP+S  F AST  TN+    FSGK++L  WYQT A+ CR    DP
Sbjct: 1   MSLRVAAASLLKKLRFPASHFFAASTATTNA----FSGKLKLFRWYQTGAHGCRIDLRDP 56

Query: 57  CLWIVVSGYAA----------VTLGISASTVFAEDVSTETSIDNDSGDELNGFRKIEDGS 106
           CLWIV+SG+ A            + IS  +   + +       N     L    KI   S
Sbjct: 57  CLWIVMSGHVASISHAYRTNATEVLISFLSYIVKQLKENWFTQNQKVSFLGAGPKIGFIS 116

Query: 107 VVSNTHTAKWRIFTDKAR------DFFLQGKLDEAEKLFLSAVQEAKEGFGKQDPHVASA 160
            +      K   +   A       D    GKLDEAEKLFLSA++EAKEGFG++DPHVASA
Sbjct: 117 KMLRIKGFKLEAWIKHALTPMLTFDLIKIGKLDEAEKLFLSAIEEAKEGFGEKDPHVASA 176

Query: 161 CNNLAEFYRIRKEFDKAEPLYLEAINILEESFGPDDIR 198
           CNNLAE YR++K FDKAEPLYLEAINILEESFGPDD+R
Sbjct: 177 CNNLAELYRVKKAFDKAEPLYLEAINILEESFGPDDVR 214