Miyakogusa Predicted Gene

Lj6g3v0392210.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0392210.1 Non Chatacterized Hit- tr|B8A1Y8|B8A1Y8_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,57.14,6e-16,
,CUFF.57760.1
         (201 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g33220.1                                                       325   2e-89
Glyma18g05010.1                                                       317   4e-87
Glyma19g05940.1                                                       115   3e-26

>Glyma11g33220.1 
          Length = 409

 Score =  325 bits (832), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 152/200 (76%), Positives = 174/200 (87%), Gaps = 4/200 (2%)

Query: 1   MFNKSDVQKLAQFAAHFFTDLDTDQHPSCNFATFVPFAEDTPLQRAEWIKFMGAFANVEA 60
           MFN SD QKLA+F+++F +D  TDQ P+CNFATFVPF EDTPLQRAEWIKFMGAFANVEA
Sbjct: 149 MFNNSDYQKLAEFSSYFLSD--TDQQPACNFATFVPFMEDTPLQRAEWIKFMGAFANVEA 206

Query: 61  RANDVYSTVKQNYLCLAEIAKTRTSFKPTVAWMKYDTGVWSFTKDGYQLKYVEDAGGANL 120
           RAN VY+ VK NYLCLA++A TRT+FKPTVAWM+Y  G+WSFT++ YQLKYV+DAGG  L
Sbjct: 207 RANQVYTAVKVNYLCLAKVATTRTTFKPTVAWMRYKNGLWSFTQEKYQLKYVQDAGGEIL 266

Query: 121 DDSMSKHTYNISDPDDLEELHAILCTVEVVIDETLTSDPVNYTLSTFIQNLNVEDRSCFS 180
               +K+TYN+SDPDDLEE HAILCT EVVIDETLTSDPVNYT+S FIQNLNVEDRSCFS
Sbjct: 267 --GANKNTYNVSDPDDLEEFHAILCTAEVVIDETLTSDPVNYTMSAFIQNLNVEDRSCFS 324

Query: 181 FLTNTSLWRYDKRIQNYTAL 200
           F++NTSLWRYDKR+ N  AL
Sbjct: 325 FISNTSLWRYDKRVYNSVAL 344


>Glyma18g05010.1 
          Length = 396

 Score =  317 bits (813), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 150/201 (74%), Positives = 172/201 (85%), Gaps = 4/201 (1%)

Query: 1   MFNKSDVQKLAQFAAHFFTDLDTDQHPSCNFATFVPFAEDTPLQRAEWIKFMGAFANVEA 60
           +FN SD QKLA+F+++F +D  TDQ P+CNFATFVPF ED PLQ AEWIKFMGAFANVEA
Sbjct: 136 LFNNSDYQKLAEFSSYFLSD--TDQQPACNFATFVPFIEDIPLQGAEWIKFMGAFANVEA 193

Query: 61  RANDVYSTVKQNYLCLAEIAKTRTSFKPTVAWMKYDTGVWSFTKDGYQLKYVEDAGGANL 120
           RAN VY+ VK NYLCLA+IA +RT+FKPTVAWM+Y  G+WSFT++ YQLK V+DAGG  L
Sbjct: 194 RANQVYTAVKANYLCLAKIATSRTTFKPTVAWMRYKNGLWSFTQEKYQLKDVQDAGGEIL 253

Query: 121 DDSMSKHTYNISDPDDLEELHAILCTVEVVIDETLTSDPVNYTLSTFIQNLNVEDRSCFS 180
               +K+TYN+SDPDDLEE HAILC VEVVIDETLTSDPVNYT STFIQNLNVEDRSCFS
Sbjct: 254 --GANKNTYNVSDPDDLEEFHAILCAVEVVIDETLTSDPVNYTFSTFIQNLNVEDRSCFS 311

Query: 181 FLTNTSLWRYDKRIQNYTALG 201
           F++NTSLWRYDKR+ N  ALG
Sbjct: 312 FISNTSLWRYDKRVYNSVALG 332


>Glyma19g05940.1 
          Length = 137

 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 80/132 (60%), Gaps = 26/132 (19%)

Query: 69  VKQNYLCLAEIAKTRTSFKPTVAWMKYDTGVWSFTKDGYQLKYVEDAGGANLDDSMSKHT 128
           VK NYL L EI+ +RT FKP VA M+Y   VWS          V   G  +++       
Sbjct: 1   VKTNYLWLPEISTSRTIFKPMVASMRYK-NVWSL---------VFYTGKVSIE------- 43

Query: 129 YNISDPDDLEELHAILCTVEVVIDETLTSDPVNYTLSTFIQNLNVEDRSCFSFLTNTSLW 188
                    E L ++  TVEV IDETLT DPVNYT STFIQNL+VE RSCFSF++NTSLW
Sbjct: 44  ---------EVLLSLYSTVEVAIDETLTFDPVNYTFSTFIQNLHVEGRSCFSFISNTSLW 94

Query: 189 RYDKRIQNYTAL 200
           RYDKR+ N  AL
Sbjct: 95  RYDKRVYNSVAL 106