Miyakogusa Predicted Gene
- Lj6g3v0365860.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0365860.1 tr|B9I119|B9I119_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568469 PE=4 SV=1,48.7,8e-19,ZINC
FINGER (CCCH-TYPE) PROTEIN-LIKE (OS01G0884500 PROTEIN),NULL; GRB10
INTERACTING GYF PROTEIN,NULL,CUFF.57745.1
(324 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma11g33010.1 103 3e-22
Glyma16g33390.1 80 4e-15
Glyma09g28660.1 79 9e-15
Glyma06g01070.1 54 2e-07
>Glyma11g33010.1
Length = 108
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 66/84 (78%), Gaps = 2/84 (2%)
Query: 243 SAIVVE-QKVSISTADVIELSDSDEEDVNVADASAGEKM-ESPGISIWHCLGPSGEKRGP 300
SAI VE Q++SIST +VI LSD DE++ N AD S G K+ ESP SIW+C+GP G+K GP
Sbjct: 4 SAIPVEEQEISISTTNVIVLSDDDEQEANAADNSMGRKVVESPENSIWYCVGPYGKKGGP 63
Query: 301 YSMSVLKCWSESVTHPIKFKVWKT 324
+SMS LK WS+S +HP++FKVWKT
Sbjct: 64 FSMSALKRWSDSASHPLEFKVWKT 87
>Glyma16g33390.1
Length = 724
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 38/166 (22%)
Query: 1 MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRR--------- 51
+++ L+K+P I+++EQ AR LHED+ +HW+ REL LLQN IDQANE+ R
Sbjct: 253 VKDCLVKRPMIVDMEQTARVLHEDMTRHWLARELILLQNLIDQANEKVMPRWHGRGEGAI 312
Query: 52 ---------------ELSDYMDRKLKLETPLEQTRLLSNIPNVIPEIADSNLSPEGSPRE 96
L +Y+ R+ KL++P EQ RLL P V IAD S +P
Sbjct: 313 SVLLYGFHLVFFSVNTLDEYLRRREKLQSPDEQERLLREFPQV---IADEQKSESTTP-- 367
Query: 97 DKLEQNGLPDLAIGETSVSGGCYSKHSSFARYLN-----KIDVAGL 137
D L++N +L Y+K SS N K+D+A L
Sbjct: 368 DVLDKNVENNLQ----EFWQATYTKSSSVTEVPNAVANTKLDIADL 409
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 249 QKVSISTADVIELSDSD-EEDVNVADASAGEKMESPGISIWHCLGPSGEKRGPYSMSVLK 307
+++ S VIELSD D EE+ + A ++S + +WH P G +GP+S+ LK
Sbjct: 629 KQIQPSQIQVIELSDDDDEENEKPSTAKLVPSVQSDTL-MWHYRDPMGNVQGPFSLISLK 687
Query: 308 CWSESVTHPIKFKVWKT 324
WS++ P FKVWK+
Sbjct: 688 RWSDAGYFPRHFKVWKS 704
>Glyma09g28660.1
Length = 888
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 25/102 (24%)
Query: 1 MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANER------------- 47
+++GL+K+P I+++EQ AR LHED+IKHW+ RE LLQN ID+ANE+
Sbjct: 268 VKDGLVKRPMIVDMEQTARVLHEDMIKHWLAREFILLQNLIDRANEKVGYLLNFSPNPQP 327
Query: 48 ------------GRRRELSDYMDRKLKLETPLEQTRLLSNIP 77
G+ L +Y+ R+ KL++P EQ RLL P
Sbjct: 328 PELCPGGMGEEWGQPLTLDEYLRRREKLQSPDEQERLLREFP 369
>Glyma06g01070.1
Length = 1442
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 1 MRNGLLKQPTILELEQKARSLHEDIIKHWIPRELQLLQNRIDQANERGRRRELSDYMDRK 60
++ GL+ + T+ +++ KA L E +K W+ E L + D+A+E+GRR+EL + +++
Sbjct: 669 IKCGLINRLTVGDIQDKALVLQEARVKDWLETETVRLSHLRDRASEKGRRKELRECVEKL 728
Query: 61 LKLETPLEQTRLLSNIPNVIPEIADSNLSPEGSPREDKLE 100
L+TP E+ R L IP + D N+ P ED E
Sbjct: 729 QLLKTPEERQRRLEEIPEI---HVDPNMDPSYESEEDANE 765