Miyakogusa Predicted Gene

Lj6g3v0338490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0338490.1 gene.g64084.t1.1
         (177 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g05830.1                                                       241   3e-64
Glyma18g05830.3                                                        83   2e-16

>Glyma18g05830.1 
          Length = 810

 Score =  241 bits (615), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 130/174 (74%), Positives = 142/174 (81%), Gaps = 3/174 (1%)

Query: 2   ASPSFGGFKKAAPLVDSPPCSFTSEKYAFDCSPAIPNVRSWPTGPSSESPDFQFKEGPED 61
           ASPSFGGF+KAAPL DSPPCSFTSEK+AFD S A PNV SWPTGPS  SPDFQ K   ED
Sbjct: 571 ASPSFGGFRKAAPLADSPPCSFTSEKFAFDSSIAFPNVGSWPTGPSL-SPDFQPKGKSED 629

Query: 62  T-GVFLFETSSTGMSVQGSVSKGEKKVKLQKDRHNSFEQEDIFMGDNELSSEKKIAGDAP 120
             G F  ETSST MSVQGSVSKGE++VK+QKD + SFEQED+F+GDNELSSEKK++ DAP
Sbjct: 630 ACGGFDCETSSTDMSVQGSVSKGERQVKMQKDTNKSFEQEDVFLGDNELSSEKKMSEDAP 689

Query: 121 TSNNHTLECEGTEDTNPK-TAHCPETAESPGHVEEISSSLKKPDKHESQVDNRK 173
           +S NHT ECEGTEDTNPK T  C   A+S GHVEEISS LKKPDK ESQVD RK
Sbjct: 690 SSKNHTKECEGTEDTNPKTTTQCFVAADSSGHVEEISSLLKKPDKQESQVDKRK 743


>Glyma18g05830.3 
          Length = 165

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 47/60 (78%), Gaps = 1/60 (1%)

Query: 115 IAGDAPTSNNHTLECEGTEDTNPKTA-HCPETAESPGHVEEISSSLKKPDKHESQVDNRK 173
           ++ DAP+S NHT ECEGTEDTNPKT   C   A+S GHVEEISS LKKPDK ESQVD R+
Sbjct: 1   MSEDAPSSKNHTKECEGTEDTNPKTTTQCFVAADSSGHVEEISSLLKKPDKQESQVDKRR 60