Miyakogusa Predicted Gene

Lj6g3v0143860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0143860.1 tr|F4I5S3|F4I5S3_ARATH Chromosome transmission
fidelity protein 18 OS=Arabidopsis thaliana GN=CTF18 ,57.19,0,no
description,NULL; seg,NULL; CTF18, CHROMOSOME TRANSMISSION FIDELITY
FACTOR 18 HOMOLOG,NULL; HOLLI,CUFF.57527.1
         (579 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g24360.1                                                       474   e-133
Glyma20g18550.1                                                       469   e-132
Glyma02g31170.1                                                       294   2e-79
Glyma20g18480.1                                                       193   6e-49
Glyma10g24400.1                                                       117   4e-26

>Glyma10g24360.1 
          Length = 460

 Score =  474 bits (1221), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/377 (63%), Positives = 278/377 (73%), Gaps = 25/377 (6%)

Query: 135 IRSCLNTLQFVSKKKETLNAIDIGSQVVGQKDMSKNVLDIWKQFFQRKRTKKMERESRRS 194
           I +C    QF           DIGSQVVGQKDMSKNVLDIWK+         +ER+S R 
Sbjct: 81  IFTCFTCAQF-----------DIGSQVVGQKDMSKNVLDIWKE---------IERKSHRG 120

Query: 195 KSFEFDYLYSLISNRGDSDLFLDGIHENILQLNYHDPVMQKTVKCFNSLGVYDLMHQYIM 254
           KSFEFD LYSL+SNRGDS+L LDGIHEN+L+LNYHDPVMQKTV+CFN+LGVYDLMHQYIM
Sbjct: 121 KSFEFDSLYSLVSNRGDSNLILDGIHENVLRLNYHDPVMQKTVECFNNLGVYDLMHQYIM 180

Query: 255 CTQQMRIHVYLPAIAVNIHHIVAQVQKPNIEWPKSYQRC-----RAMMMERMDILKTWHY 309
            TQQ+ ++VYLP +A+ +HHIV+QVQKP IEWPKS+QR      R MMME+MDIL TWH+
Sbjct: 181 HTQQLPLYVYLPLVAITVHHIVSQVQKPTIEWPKSHQRYILLLYRTMMMEKMDILNTWHH 240

Query: 310 QISPSIARNLSASSFVEDXXXXXXXXXXXXTIRPVALQLLSDKEKNDLAELVSTMVSYAV 369
           +I P IARNLSASSFVED            TIRPVA QLLSDKEKNDLA+LVSTMVSY +
Sbjct: 241 KIPPYIARNLSASSFVEDLISPLLHILSPPTIRPVAFQLLSDKEKNDLAQLVSTMVSYTI 300

Query: 370 TYKTMKPDILLHTVKYEGADDLGLSLVPPISNFINFKDYTSNHYVLSLAMXXXXXXXXXX 429
           TYKT+K D+L  T + E AD L LSLVPPIS+FINFKDYTSNH VLS+AM          
Sbjct: 301 TYKTVKSDMLPQTQRCEVADGLALSLVPPISDFINFKDYTSNHNVLSVAMKQVLVHEVEK 360

Query: 430 XXILHVNNDKTVASVNGGHEIIDAGTNKVPLANTNRATAVDLKTNEFQANVFARLLNPTP 489
             IL V+NDKT A  NGGHE+I+ GTN +PLANTN ATAVD+KTNE QANV ++ LN  P
Sbjct: 361 HKILQVSNDKTGAFTNGGHEVIETGTNNIPLANTNHATAVDMKTNENQANVLSQQLNANP 420

Query: 490 ITVSQDSNPNGSANATD 506
             VS + N + S+ A D
Sbjct: 421 TAVSPNLNSDKSSIAAD 437


>Glyma20g18550.1 
          Length = 419

 Score =  469 bits (1206), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 245/419 (58%), Positives = 290/419 (69%), Gaps = 31/419 (7%)

Query: 155 IDIGSQVVGQKDMSKNVLDIWKQFFQRKRTKKMERESRRSKSFEFDYLYSLISNRGDSDL 214
            DIGSQVVGQKD SKNVLD+WK+ F ++RTKK ER+S R KSFEFD LYSL+SNRGDS+L
Sbjct: 26  FDIGSQVVGQKDTSKNVLDVWKEIFHKRRTKKTERKSHRGKSFEFDSLYSLVSNRGDSNL 85

Query: 215 FLDGIHENILQLNYHDPVMQKTVKCFNSLGVYDLMHQYIMCTQQMRIHVYLPAIAVNIHH 274
            LDGIHEN+LQLNYHDPVMQKTVKCF++LGVYDLMHQYIM TQQM ++VYLP +A+ +HH
Sbjct: 86  ILDGIHENVLQLNYHDPVMQKTVKCFDNLGVYDLMHQYIMHTQQMPLYVYLPLVAITVHH 145

Query: 275 IVAQVQKPNIEWPKSYQR-----CRAMMMERMDILKTWHYQISPSIARNLSASSFVEDXX 329
           IV+QVQKPNIEWPKS+QR      R MMME+MDIL TWH++I P IARNLSASSFVED  
Sbjct: 146 IVSQVQKPNIEWPKSHQRYILLLYRTMMMEKMDILNTWHHKIPPYIARNLSASSFVEDLI 205

Query: 330 XXXXXXXXXXTIRPVALQLLSDKEKNDLAELVSTMVSYAVTYKTMKPDILLHTVKYEGAD 389
                     T+RPVA QLLSDKE+NDLA+LVSTMVSY +TYKT+K DIL  T + E AD
Sbjct: 206 SPLLHILSPPTVRPVAFQLLSDKEQNDLAQLVSTMVSYTITYKTLKSDILPQTQRCEVAD 265

Query: 390 DLGLSLVPPISNFINFKDYTSNHYVLSLAMXXXXXXXXXXXXILHVNNDKTVASVNGGHE 449
            L LSLVPPIS+FINFKDYTSNHYVLS+AM            IL V NDK  A  NGGHE
Sbjct: 266 GLALSLVPPISDFINFKDYTSNHYVLSVAMKQVLVHEVEKHKILQVGNDKAGAFTNGGHE 325

Query: 450 IIDAGTNKVPLANTNRATAVDLKTNEF-QANVFARLLNPTPITVSQDSNPNGSANATDXX 508
           +I+ GTN +PLANT    + +L +N+  +A    +LLN     +     P+ S++     
Sbjct: 326 VIETGTNNIPLANT---ISPNLDSNKISRAADCGKLLN-----MGNMKKPSRSSSI---- 373

Query: 509 XXXXXXXXXXXXXXXXXXXXXXXXNVKGLQNDRSQQKEATLEKHRCPLLFKFNEGFTNA 567
                                    +K       + +EATLEK R PLLFKFNE FTN+
Sbjct: 374 -------------FLAYLNSILMYIMKSCLRPPIKNEEATLEKDRYPLLFKFNEEFTNS 419


>Glyma02g31170.1 
          Length = 348

 Score =  294 bits (752), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/241 (65%), Positives = 177/241 (73%), Gaps = 14/241 (5%)

Query: 179 FQRKRTKKMERESRRSKSFEFDYLYSLISNRGDSDLFLDGIHENILQLNYHDPVMQKTVK 238
           F ++RTKKMER+S R KSFEFD LYSL+SNRGDS+L LDGIHENILQLNYHD VMQKTVK
Sbjct: 41  FHKRRTKKMERKSHRGKSFEFDSLYSLVSNRGDSNLILDGIHENILQLNYHDVVMQKTVK 100

Query: 239 CFNSLGVYDLMHQYIMCTQQMRIHVYLPAIAVNIHHIVAQVQKPNIEWPKSYQRCRAMMM 298
           CFN+LGVYDLMHQYIM TQQM      P   ++ +   A     N    K Y   R MMM
Sbjct: 101 CFNNLGVYDLMHQYIMHTQQM------PLYGISCY--CASRLSINC---KIY---RTMMM 146

Query: 299 ERMDILKTWHYQISPSIARNLSASSFVEDXXXXXXXXXXXXTIRPVALQLLSDKEKNDLA 358
           E+MDIL TW+++I   IARNL ASSFV              TIRPVA QLLSDKEKNDLA
Sbjct: 147 EKMDILNTWNHKIPSYIARNLLASSFVVTLISPLLHILSPPTIRPVAFQLLSDKEKNDLA 206

Query: 359 ELVSTMVSYAVTYKTMKPDILLHTVKYEGADDLGLSLVPPISNFINFKDYTSNHYVLSLA 418
           +LVSTMVSY +TYKT+K  IL  T + E AD L LSLVPPIS+FINFKDYTSNHYVLS+A
Sbjct: 207 QLVSTMVSYTITYKTVKSYILPQTQRCEVADGLALSLVPPISDFINFKDYTSNHYVLSIA 266

Query: 419 M 419
           M
Sbjct: 267 M 267


>Glyma20g18480.1 
          Length = 298

 Score =  193 bits (490), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 104/181 (57%), Positives = 116/181 (64%), Gaps = 16/181 (8%)

Query: 281 KPNIEWPKSYQRC----------------RAMMMERMDILKTWHYQISPSIARNLSASSF 324
           KPNIEWPKS+QR                 R MMME+MDIL TWH++I P IARNLSASSF
Sbjct: 105 KPNIEWPKSHQRYILLLFPNVVSYKIFRYRTMMMEKMDILNTWHHKIPPYIARNLSASSF 164

Query: 325 VEDXXXXXXXXXXXXTIRPVALQLLSDKEKNDLAELVSTMVSYAVTYKTMKPDILLHTVK 384
           VE             TIRPVA QLLSDKEKNDLA+LVSTMVSY +TYKT+K DIL  T +
Sbjct: 165 VETLISPLLHILSPPTIRPVAFQLLSDKEKNDLAQLVSTMVSYTITYKTVKSDILPQTQR 224

Query: 385 YEGADDLGLSLVPPISNFINFKDYTSNHYVLSLAMXXXXXXXXXXXXILHVNNDKTVASV 444
            +  D L  SLVPPIS+FIN KDYTSNHYVLS+A+            IL V NDK  A  
Sbjct: 225 CDVVDSLARSLVPPISDFINLKDYTSNHYVLSIAIKQLLVHDVEKHKILQVGNDKAGAFT 284

Query: 445 N 445
           N
Sbjct: 285 N 285


>Glyma10g24400.1 
          Length = 97

 Score =  117 bits (293), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 65/75 (86%)

Query: 1  MNSVLSHSRPKCLVVDEIDGALGDGRGAVEVLLKLVSAERKQNGGNKSLGERQLDGKSSK 60
          MNSVLS SRPKCLVVDEIDGALGDG+GAVEVLLK++S+ERK + G +SLG+ Q + KSSK
Sbjct: 22 MNSVLSDSRPKCLVVDEIDGALGDGKGAVEVLLKMISSERKPDAGKQSLGKGQQERKSSK 81

Query: 61 KRQKTASLSRPVICF 75
          K  KTASLSRPVIC 
Sbjct: 82 KGSKTASLSRPVICI 96