Miyakogusa Predicted Gene

Lj6g3v0098580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0098580.1 Non Chatacterized Hit- tr|K3YME3|K3YME3_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,95.07,0,THIOREDOXIN-LIKE PROTEN 4A, 4B,mRNA splicing factor,
thioredoxin-like U5 snRNP; Thioredoxin-like,Thi,CUFF.57499.1
         (142 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g28850.1                                                       296   5e-81
Glyma09g42010.1                                                       296   5e-81
Glyma11g10560.1                                                       204   3e-53
Glyma20g33110.1                                                        86   2e-17
Glyma12g02860.1                                                        84   4e-17
Glyma20g00460.1                                                        53   1e-07

>Glyma19g28850.1 
          Length = 142

 Score =  296 bits (758), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 142/142 (100%)

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETIY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWA+KDKQEFIDI+ET+Y
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 142
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142


>Glyma09g42010.1 
          Length = 142

 Score =  296 bits (758), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 142/142 (100%)

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETIY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWA+KDKQEFIDI+ET+Y
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 142
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142


>Glyma11g10560.1 
          Length = 117

 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/103 (92%), Positives = 101/103 (98%)

Query: 40  QMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN 99
           +MDEVLASVAE IKNFAVIYLVDITEVPDFNTMYELY+P TVMFFFRNKHIMIDLGTGNN
Sbjct: 15  KMDEVLASVAEKIKNFAVIYLVDITEVPDFNTMYELYEPCTVMFFFRNKHIMIDLGTGNN 74

Query: 100 NKINWAMKDKQEFIDIIETIYRGARKGRGLVIAPKDYSTKYRY 142
           NKINWA+KDKQEFIDI+ET+YRGARKGRGLVI+PKDYSTKYRY
Sbjct: 75  NKINWALKDKQEFIDIVETVYRGARKGRGLVISPKDYSTKYRY 117


>Glyma20g33110.1 
          Length = 151

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 6/137 (4%)

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MS +L        VD  I    +++VV+RFG   D  C+Q D +L+  A  +  FA + L
Sbjct: 1   MSDMLTTFTKKKEVDTIIRDTFDKVVVLRFGRASDLVCLQQDHILSKAARDVSKFATVAL 60

Query: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDII 116
           VD+ +  +     + +D    PSTV FFF   H+ +D GT ++ K   A   KQ+F+D++
Sbjct: 61  VDV-DSEEIQVYLKYFDITLIPSTV-FFFNAHHMKMDYGTADHTKWIGAFYAKQDFVDVV 118

Query: 117 ETIYRGARKGRGLVIAP 133
           E I+RGA KG+ +V  P
Sbjct: 119 EAIFRGAMKGKLIVNCP 135


>Glyma12g02860.1 
          Length = 103

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 68/126 (53%), Gaps = 26/126 (20%)

Query: 7   HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDIT-- 64
           HLHSG AVD+AIL+EEER+VVIRFG DWD TCMQ+D            F +++ +  T  
Sbjct: 1   HLHSGLAVDEAILSEEERVVVIRFGLDWDHTCMQVDN-----PHPFHIFIMLHKLTYTFK 55

Query: 65  -EVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETIYRGA 123
               D     +  +P T +              G++       K  QEFIDI+ET+YR A
Sbjct: 56  FHNHDATKSNQTLEPETTI-----------RSIGHS-------KTSQEFIDIVETVYRRA 97

Query: 124 RKGRGL 129
           RKGRG+
Sbjct: 98  RKGRGV 103


>Glyma20g00460.1 
          Length = 29

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 28/28 (100%)

Query: 111 EFIDIIETIYRGARKGRGLVIAPKDYST 138
           +++DI+ET+YRGARKGRGLV+APKDYS+
Sbjct: 1   KYMDIVETVYRGARKGRGLVMAPKDYSS 28