Miyakogusa Predicted Gene

Lj6g3v0057860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0057860.1 tr|A9SEI3|A9SEI3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_164550,28.1,2e-18,DUF716,Protein of unknown function
DUF716, TMEM45; seg,NULL,NODE_94684_length_1160_cov_11.820689.path1.1
         (289 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g21540.1                                                       114   1e-25
Glyma19g28160.1                                                        66   4e-11

>Glyma20g21540.1 
          Length = 79

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 64/81 (79%), Gaps = 2/81 (2%)

Query: 164 KPGAFFAEFLLSSGLVFKGTWLLQTGLSLYTDAFGLKGCQKISLLPPQQETVDMHCDLDE 223
           KP AFFAEFLLS GLVFKGTWLLQ G SLYTD FGLKGC KI+ L   +E+VD+ CDL+E
Sbjct: 1   KPLAFFAEFLLSCGLVFKGTWLLQVGFSLYTDVFGLKGCGKITFLG--KESVDVQCDLNE 58

Query: 224 DSFRGVAMMQFLFTVHAFVVL 244
           D  RGVA+M FLF VHA  V+
Sbjct: 59  DILRGVALMHFLFIVHAIGVM 79


>Glyma19g28160.1 
          Length = 301

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 165 PGAFFAEFLLSSGLVFKGTWLLQTGLSLYTDAFGLKGCQKISLLPPQQETVDMHCDLDED 224
           P  F A+  LS+    +G W LQ+GLSLY DAF  +GC ++  +    E     CDLDE 
Sbjct: 174 PRLFPADAALSATFCLRGLWALQSGLSLYADAFIPEGCHRLLDVTSGVEG-STQCDLDES 232

Query: 225 SFRGVAMMQFLFTVHAFVVLVLAIGMFGVLASN 257
             R VA++   F +HA +V+++ +  + + A +
Sbjct: 233 KLRAVAILDLAFLIHAIIVVLIVLLTYALFARS 265