Miyakogusa Predicted Gene

Lj6g3v0057770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0057770.1 tr|B9HKT6|B9HKT6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_564980 PE=4
SV=1,66.18,6e-19,seg,NULL,CUFF.57442.1
         (107 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g21600.1                                                       113   4e-26
Glyma10g27640.1                                                       111   2e-25
Glyma20g34310.1                                                        89   1e-18
Glyma10g33340.1                                                        87   4e-18

>Glyma20g21600.1 
          Length = 113

 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 66/82 (80%), Gaps = 6/82 (7%)

Query: 8  DSKDANNYM--DNKPVMGSSLGGEKVDDHDHDHVNGEDDSDSNSLLPPRRGGMSRNSDKT 65
          DS+D N  +   +KPV+ SSL  EKV+DH    VNGEDDSDSNSLLPPRRGGMSRN +KT
Sbjct: 2  DSEDVNGCLMDKHKPVVASSLVCEKVEDH----VNGEDDSDSNSLLPPRRGGMSRNCEKT 57

Query: 66 RLKVQWNDRNGNKLVEVLEYEP 87
          R KVQWNDRNGNKL EVLEYEP
Sbjct: 58 RRKVQWNDRNGNKLAEVLEYEP 79


>Glyma10g27640.1 
          Length = 80

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 66/82 (80%), Gaps = 6/82 (7%)

Query: 8  DSKDANNYM--DNKPVMGSSLGGEKVDDHDHDHVNGEDDSDSNSLLPPRRGGMSRNSDKT 65
          DSKD N  +   +KPV+ SSL  EKV+DH    VNGEDDSDSNSLLPPRRGGMSRN +KT
Sbjct: 2  DSKDINGCLMDKHKPVVTSSLVCEKVEDH----VNGEDDSDSNSLLPPRRGGMSRNCEKT 57

Query: 66 RLKVQWNDRNGNKLVEVLEYEP 87
          R KVQWNDRNGNKL EVLEYEP
Sbjct: 58 RRKVQWNDRNGNKLAEVLEYEP 79


>Glyma20g34310.1 
          Length = 109

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 70/114 (61%), Gaps = 16/114 (14%)

Query: 5   MDT--DSKDANNYMDNKP------VMGSSLGGEKVDDHDHDHVNGEDDSDSNSLLPPRRG 56
           MDT   +KD N  + NKP      +  +SL G KV+DH     N ED+SDSNSLLP R+G
Sbjct: 1   MDTKKSTKDTNGCI-NKPMAVTVTLTVASLEGRKVEDHS----NREDESDSNSLLPVRKG 55

Query: 57  GMSRNSDKT--RLKVQWNDRNGNKLVEVLEYEPXXXXXXXXXXXXXX-CICTIM 107
           G++R SDKT  + KVQWNDR GNKLVEVLEYEP               CIC+IM
Sbjct: 56  GIARKSDKTYRKRKVQWNDRIGNKLVEVLEYEPSDVSDSEDEDDGGDPCICSIM 109


>Glyma10g33340.1 
          Length = 108

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 69/114 (60%), Gaps = 17/114 (14%)

Query: 5   MDT--DSKDANNYMDNKP------VMGSSLGGEKVDDHDHDHVNGEDDSDSNSLLPPRRG 56
           MDT   +KD N  + NKP      +  +SL G KV+D      N EDDSDSNSLLP R+G
Sbjct: 1   MDTKKSTKDTNGCV-NKPMALTMTLTVASLEGRKVEDR-----NKEDDSDSNSLLPLRKG 54

Query: 57  GMSRNSDKT--RLKVQWNDRNGNKLVEVLEYEPXXXXXXXXXXXXXX-CICTIM 107
           G+SR SDKT  + KVQWNDR GNKLVEVLEYEP               CIC+IM
Sbjct: 55  GISRKSDKTYRKRKVQWNDRIGNKLVEVLEYEPSDVSDSEDEDDGGDPCICSIM 108