Miyakogusa Predicted Gene
- Lj5g3v2300340.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2300340.2 Non Chatacterized Hit- tr|C0P2S7|C0P2S7_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,48.72,7e-17,seg,NULL;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,Nse4; Nse4,Nse4,CUFF.57318.2
(226 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma10g44310.1 278 5e-75
Glyma20g39130.1 262 3e-70
Glyma03g30010.1 177 8e-45
>Glyma10g44310.1
Length = 363
Score = 278 bits (710), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 144/198 (72%), Positives = 165/198 (83%), Gaps = 4/198 (2%)
Query: 31 SCRRVIRSQFLKLKTLINEKRDDLINTDSDKFETILDQFHKLHEQVKKPREQVADAEALL 90
+ RRVIRSQFL+LK LINEKRDDL+NT+SDKF+TILD+F KLH QV+KPREQVADAEALL
Sbjct: 25 ATRRVIRSQFLQLKNLINEKRDDLMNTESDKFDTILDEFDKLHVQVEKPREQVADAEALL 84
Query: 91 DFTRTLVGSVKSLVNEGITPSHFVSSLL-KYYH-QPSFNWQKLGLAVSPFFPTVVNGSST 148
D TRTLVGSVKSL NEG+TPS FVSSLL +Y H Q S +W KLGLA SP F + V+GSST
Sbjct: 85 DLTRTLVGSVKSLANEGVTPSQFVSSLLIRYAHTQHSIDWHKLGLAASPIFLS-VHGSST 143
Query: 149 MLGPMENQLKQRKVPARGKRNAGPTTTARPQQLDEATLGDEKTDTDKNMATMFNVLRKMK 208
MLGPM+NQ KQRK+ R R+ T RPQQLDEA + +EKTDTDKNMATMF++LR+ K
Sbjct: 144 MLGPMDNQFKQRKMGVRRNRDPRQIATTRPQQLDEA-VTEEKTDTDKNMATMFHILRRTK 202
Query: 209 LVPLENLILNRTSFAQTV 226
VPLENLILNR SFAQ+V
Sbjct: 203 RVPLENLILNRESFAQSV 220
>Glyma20g39130.1
Length = 356
Score = 262 bits (669), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 142/200 (71%), Positives = 161/200 (80%), Gaps = 12/200 (6%)
Query: 33 RRVIRSQFLKLKTLINEKRDDLINTDSDKFETILDQFHKLHEQVKKPREQVADAEALLDF 92
RRVIRSQFL+LK INEKRDDL+NT+SDKF+TILD+F KLH QV+KPREQVADAEALLD
Sbjct: 20 RRVIRSQFLQLKNFINEKRDDLMNTESDKFDTILDEFDKLHVQVEKPREQVADAEALLDL 79
Query: 93 TRTLVGSVKSLVNEGITPSHFVSSLL-KYYH-QPSFNWQKLGLAVSPFFPTVVNGSSTML 150
TRTLVGSVKSL NEG+TPS FVSSLL +Y H Q S +W +LGLA SP F + +GSSTML
Sbjct: 80 TRTLVGSVKSLTNEGVTPSQFVSSLLIRYAHAQHSIDWHQLGLAASPIFLS-FHGSSTML 138
Query: 151 GPMENQLKQRK--VPARGKRNAGP--TTTARPQQLDEATLGDEKTDTDKNMATMFNVLRK 206
GPM+NQ KQRK VP RN P T RP Q+DEA + +E TDTDKNMATMF++LR+
Sbjct: 139 GPMDNQFKQRKTGVP----RNCNPRQIATTRPLQVDEA-VTEENTDTDKNMATMFHILRR 193
Query: 207 MKLVPLENLILNRTSFAQTV 226
K VPLENLILNR SFAQTV
Sbjct: 194 TKRVPLENLILNRESFAQTV 213
>Glyma03g30010.1
Length = 342
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 137/207 (66%), Gaps = 16/207 (7%)
Query: 33 RRVIRSQFLKLKTLINEKRDDLINTDSDKFETILDQFHKLHEQVKKPREQVADAEALLDF 92
RR IRS++L +K +I+++R+++ DS KF I ++ LH+ V KPREQVADA+ALLD
Sbjct: 34 RRGIRSRYLSVKNMIHDEREEIARADSHKFNLIFNEMETLHQLVTKPREQVADAKALLDI 93
Query: 93 TRTLVGSVKSLVNEGITPSHFVSSLLKY-------------YHQPSFNWQKLGLAVSPFF 139
T++LV SVK++ G+TPS FV+ +LK + + S W+ +G+AVS F
Sbjct: 94 TQSLVMSVKNIAIGGLTPSDFVTHILKKFGGQAGPSNSTEDFSRNSVAWKDIGVAVSRVF 153
Query: 140 PTVVNGSSTMLGPMENQLKQRKVPARGKRNAGPTTTARPQQLDEATLGDEKTDTDKNMAT 199
G TM+G M+ ++KQRKV R KR PT ARP++L + G+E+T+TDK+M T
Sbjct: 154 RAGC-GCYTMIGAMDAKIKQRKVYNRRKR-VRPTELARPKELGGGS-GEERTETDKHMIT 210
Query: 200 MFNVLRKMKLVPLENLILNRTSFAQTV 226
MFN+LR K V LENLILNR SFAQTV
Sbjct: 211 MFNILRINKFVKLENLILNRNSFAQTV 237