Miyakogusa Predicted Gene
- Lj5g3v2300300.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2300300.1 Non Chatacterized Hit- tr|H9MCK1|H9MCK1_PINLA
Uncharacterized protein (Fragment) OS=Pinus
lambertian,71.21,2e-17,zinc finger,Zinc finger, CCCH-type; K homology
RNA-binding domain,K Homology domain; Eukaryotic type,CUFF.57316.1
(299 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma20g39160.1 436 e-122
Glyma10g44330.1 435 e-122
Glyma19g32910.1 334 8e-92
Glyma03g30030.1 334 9e-92
Glyma03g30020.1 326 2e-89
Glyma02g29360.1 316 2e-86
Glyma19g32910.2 226 2e-59
Glyma03g30030.2 226 2e-59
Glyma03g30020.2 223 1e-58
Glyma09g17210.1 69 8e-12
>Glyma20g39160.1
Length = 297
Score = 436 bits (1121), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/299 (72%), Positives = 239/299 (79%), Gaps = 2/299 (0%)
Query: 1 MDRKRGRPEGAFNGNGGAKKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFLHYV 60
MDRKRGRPE AFN NGGAKKS+PE +SF TGLGSKSKPCTKFFSTSGCPFG+GCHFLHYV
Sbjct: 1 MDRKRGRPEAAFNFNGGAKKSRPETDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYV 60
Query: 61 PGGFKAISQMINVGSSPTIPQMGRNXXXXXXXXXXXXXXXXKTRMCNKYNSSEGCKFGDR 120
PGGFKA+SQ+INVGS+P PQ+GRN KTR+CNK+N++EGCKFGD+
Sbjct: 61 PGGFKAVSQLINVGSNPVTPQVGRNPVPPSFPDGSSPPVV-KTRLCNKFNTAEGCKFGDK 119
Query: 121 CHFAHGEWELGRPTLPPYEDPRGFGQMQSNXXXXXXXXXXXXXXXXXXXXXXXXXXKISI 180
CHFAHGEWELGRPT P YEDPR GQM S+ KISI
Sbjct: 120 CHFAHGEWELGRPTAPSYEDPRVLGQMPSSRVGGRVEPPHPAHGAAASFGASATA-KISI 178
Query: 181 NASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMVHEL 240
NASLAGA+IGKNGVNSKQICRVTGAKLSIR+HD+DPNL+NIELEGSFDQI QASAMVHE+
Sbjct: 179 NASLAGAVIGKNGVNSKQICRVTGAKLSIRDHDTDPNLRNIELEGSFDQIKQASAMVHEV 238
Query: 241 ILSVSSVSGPPAKNFSSQHSAPGSNLKTKLCENFAKGSCTFGERCHFAHGTDELRRPGM 299
IL+VSS SGPP K+F+SQ SAP SN KTKLCENFAKGSCTFGERCHFAHGTDELR+ GM
Sbjct: 239 ILNVSSASGPPMKSFTSQTSAPTSNFKTKLCENFAKGSCTFGERCHFAHGTDELRKSGM 297
>Glyma10g44330.1
Length = 297
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/299 (72%), Positives = 240/299 (80%), Gaps = 2/299 (0%)
Query: 1 MDRKRGRPEGAFNGNGGAKKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFLHYV 60
MDRKRGR E AFN NGGAKKS+PEM+SF TGLGSKSKPCTKFFSTSGCPFG+GCHFLHYV
Sbjct: 1 MDRKRGRHEAAFNFNGGAKKSRPEMDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYV 60
Query: 61 PGGFKAISQMINVGSSPTIPQMGRNXXXXXXXXXXXXXXXXKTRMCNKYNSSEGCKFGDR 120
PGGFKA+SQ+INVGS+P IPQ+GRN KTR+CNK+N++EGCKFGD+
Sbjct: 61 PGGFKAVSQLINVGSNPVIPQVGRNPVPPSFPDGSSPPVV-KTRLCNKFNTAEGCKFGDK 119
Query: 121 CHFAHGEWELGRPTLPPYEDPRGFGQMQSNXXXXXXXXXXXXXXXXXXXXXXXXXXKISI 180
CHFAHGEWELGRPT P YEDPR GQM S+ KISI
Sbjct: 120 CHFAHGEWELGRPTAPSYEDPRVMGQMPSSRVGGRVEPPHPAHGAAASFGASATA-KISI 178
Query: 181 NASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMVHEL 240
NASLAGA+IGKNGVNSKQICRVTGAKLSIR+HD+DPNL+NIELEGSFDQI QASAMVHE+
Sbjct: 179 NASLAGAVIGKNGVNSKQICRVTGAKLSIRDHDTDPNLRNIELEGSFDQIKQASAMVHEV 238
Query: 241 ILSVSSVSGPPAKNFSSQHSAPGSNLKTKLCENFAKGSCTFGERCHFAHGTDELRRPGM 299
IL+VSS SGPP K+F+SQ+SAP SN KTKLCENFAKGSCTFGERCHFAHG DELR+ GM
Sbjct: 239 ILNVSSASGPPMKSFTSQNSAPASNFKTKLCENFAKGSCTFGERCHFAHGNDELRKSGM 297
>Glyma19g32910.1
Length = 295
Score = 334 bits (856), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 177/308 (57%), Positives = 211/308 (68%), Gaps = 22/308 (7%)
Query: 1 MD-RKRGRPEGAFNGNGGAKKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFLHY 59
MD RKRGRPE F+ NGG KKSK EMES +TG+GSKSKPCTKFFST+GCPFG+GCHFLHY
Sbjct: 1 MDTRKRGRPEPGFSLNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHY 60
Query: 60 VPGGFKAISQMINVGSSPTIPQMGRNXXXXXXXXXXXXXXXXKTRMCNKYNSSEGCKFGD 119
VPGG+ A++ M+N+ +P P RN KTR+CNK+N++EGCKFGD
Sbjct: 61 VPGGYNAVAHMMNL--TPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGD 118
Query: 120 RCHFAHGEWELGRPTLPPYED-----PRGFGQMQSNXXXXXXXXXXXXXXXXXXXXXXXX 174
+CHFAHGEWELG+ P ++D P G G++
Sbjct: 119 KCHFAHGEWELGKHIAPSFDDHRTMGPTGVGRLAGR---------MEPPPGPAASFGANA 169
Query: 175 XXKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQAS 234
KIS+ ASLAGAIIGK GVNSKQICR TGAKLSIREH+SDPNL+NIELEGSF+QI +AS
Sbjct: 170 TAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEAS 229
Query: 235 AMVHELILSVSSVSGPPAKNFSSQHSAP---GSNLKTKLCENFAKGSCTFGERCHFAHGT 291
MV +L+L++ +S PP K AP GSN KTKLCENF KGSCTFG+RCHFAHG
Sbjct: 230 NMVKDLLLTL-QMSAPP-KTTPGVPGAPASHGSNFKTKLCENFTKGSCTFGDRCHFAHGA 287
Query: 292 DELRRPGM 299
ELR+ G+
Sbjct: 288 AELRKSGV 295
>Glyma03g30030.1
Length = 295
Score = 334 bits (856), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 176/303 (58%), Positives = 210/303 (69%), Gaps = 12/303 (3%)
Query: 1 MD-RKRGRPEGAFNGNGGAKKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFLHY 59
MD RKRGRPE F+ NGG KKSK EMES +TG+GSKSKPCTKFFST+GCPFG+GCHFLHY
Sbjct: 1 MDIRKRGRPEPGFSLNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHY 60
Query: 60 VPGGFKAISQMINVGSSPTIPQMGRNXXXXXXXXXXXXXXXXKTRMCNKYNSSEGCKFGD 119
VPGG+ A++ M+N+ + +P RN KTR+CNK+N++EGCKFGD
Sbjct: 61 VPGGYNAVAHMMNLTPAAPLPPT-RNVAALPHVPNGSAPSAVKTRICNKFNTAEGCKFGD 119
Query: 120 RCHFAHGEWELGRPTLPPYEDPRGFGQMQSNXXXXXXXXXXXXXXXXXXXXXXXXXXKIS 179
+CHFAHGEWELG+ P ++D R G + KIS
Sbjct: 120 KCHFAHGEWELGKHIAPSFDDHRAMGPPGAGRLAGRMEPPGPAASFGANSTA-----KIS 174
Query: 180 INASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMVHE 239
+ ASLAGAIIGK GVNSKQICR TGAKLSIREH+SDPNL+NIELEGSF+QI +AS MV +
Sbjct: 175 VEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKD 234
Query: 240 LILSVSSVSGPPAKNFSSQHSAP---GSNLKTKLCENFAKGSCTFGERCHFAHGTDELRR 296
L+L++ +S PP K AP GSN KTKLCENFAKGSCTFG+RCHFAHG ELR+
Sbjct: 235 LLLTL-QMSAPP-KTTPGVPGAPASHGSNFKTKLCENFAKGSCTFGDRCHFAHGASELRK 292
Query: 297 PGM 299
G+
Sbjct: 293 SGV 295
>Glyma03g30020.1
Length = 295
Score = 326 bits (836), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 175/308 (56%), Positives = 210/308 (68%), Gaps = 22/308 (7%)
Query: 1 MD-RKRGRPEGAFNGNGGAKKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFLHY 59
MD RKRGR E F+ NGG K+SK EMES +TG+GSKSKPCTKFFST+GCPFG+GCHFLHY
Sbjct: 1 MDIRKRGRHETGFSLNGGFKRSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHY 60
Query: 60 VPGGFKAISQMINVGSSPTIPQMGRNXXXXXXXXXXXXXXXXKTRMCNKYNSSEGCKFGD 119
VPGG+ A++ M+N+ + P RN KTR+CNK+N++EGCKFGD
Sbjct: 61 VPGGYNAVAHMMNL-TPAAPPPPSRNVAALPHVPNGSAPSAVKTRICNKFNTAEGCKFGD 119
Query: 120 RCHFAHGEWELGRPTLPPYED-----PRGFGQMQSNXXXXXXXXXXXXXXXXXXXXXXXX 174
+CHFAHGEWELG+ P ++D P G G++
Sbjct: 120 KCHFAHGEWELGKHIAPSFDDHHAMGPPGAGRLAGRMEPPGPAASFGANSTA-------- 171
Query: 175 XXKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQAS 234
KIS+ ASLAGAIIGK GVNSKQICR TGAKLSIREH+SDPNL+NIELEGSF+QI +AS
Sbjct: 172 --KISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEAS 229
Query: 235 AMVHELILSVSSVSGPPAKNFSSQHSAP---GSNLKTKLCENFAKGSCTFGERCHFAHGT 291
MV +L+L++ +S PP K AP GSN KTKLCENFAKGSCTFG+RCHFAHG
Sbjct: 230 NMVKDLLLTL-QMSAPP-KTTPGVPGAPASHGSNFKTKLCENFAKGSCTFGDRCHFAHGA 287
Query: 292 DELRRPGM 299
ELR+ G+
Sbjct: 288 SELRKSGV 295
>Glyma02g29360.1
Length = 295
Score = 316 bits (809), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 171/310 (55%), Positives = 206/310 (66%), Gaps = 26/310 (8%)
Query: 1 MD-RKRGRPEGAFNGNGGAKKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFLHY 59
MD RKRGRP+ N NG KK+K E+ES ++G+GSKSKPCTKFFST+GCPFG+GCHFLHY
Sbjct: 1 MDVRKRGRPD--VNLNGAVKKTKQELESLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHY 58
Query: 60 VPGGFKAISQMINVGSSPTIPQMGRNXXXXXXXXXXXXXXXXKTRMCNKYNSSEGCKFGD 119
VPGG+ ++ M+N+ + P R KTR+CNK+N++EGCKFGD
Sbjct: 59 VPGGYNVVAHMMNLKPAAPPP---RTVAAPPPIPNGSAPSAVKTRICNKFNTAEGCKFGD 115
Query: 120 RCHFAHGEWELGRPTLPPYED--------PRGFGQMQSNXXXXXXXXXXXXXXXXXXXXX 171
+CHFAHGEWELG+P P +D P G+M
Sbjct: 116 KCHFAHGEWELGKPIAPSIDDHHHHRPLGPPAGGRMAGRIEPPPAMAGSFGAISTA---- 171
Query: 172 XXXXXKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQIN 231
KIS+ ASLAGAIIGK GVNSKQICR TGAKLSIREH+SDPNL+NIELEG+F+QI
Sbjct: 172 -----KISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIK 226
Query: 232 QASAMVHELILSVSSVSGPP--AKNFSSQHSAPGSNLKTKLCENFAKGSCTFGERCHFAH 289
+AS MV +L+L+V S+S PP + PGSN KTKLCENFAKGSCTFGERCHFAH
Sbjct: 227 EASNMVKDLLLTV-SMSAPPKSTPGVPGAPAPPGSNFKTKLCENFAKGSCTFGERCHFAH 285
Query: 290 GTDELRRPGM 299
G ELR+ G+
Sbjct: 286 GAAELRKSGV 295
>Glyma19g32910.2
Length = 225
Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/238 (52%), Positives = 150/238 (63%), Gaps = 21/238 (8%)
Query: 70 MINVGSSPTIPQMGRNXXXXXXXXXXXXXXXXKTRMCNKYNSSEGCKFGDRCHFAHGEWE 129
M+N+ +P P RN KTR+CNK+N++EGCKFGD+CHFAHGEWE
Sbjct: 1 MMNL--TPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWE 58
Query: 130 LGRPTLPPYED-----PRGFGQMQSNXXXXXXXXXXXXXXXXXXXXXXXXXXKISINASL 184
LG+ P ++D P G G++ KIS+ ASL
Sbjct: 59 LGKHIAPSFDDHRTMGPTGVGRLAGRMEPPPGPAASFGANATA---------KISVEASL 109
Query: 185 AGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMVHELILSV 244
AGAIIGK GVNSKQICR TGAKLSIREH+SDPNL+NIELEGSF+QI +AS MV +L+L++
Sbjct: 110 AGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTL 169
Query: 245 SSVSGPPAKNFSSQHSAP---GSNLKTKLCENFAKGSCTFGERCHFAHGTDELRRPGM 299
+S PP K AP GSN KTKLCENF KGSCTFG+RCHFAHG ELR+ G+
Sbjct: 170 -QMSAPP-KTTPGVPGAPASHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRKSGV 225
>Glyma03g30030.2
Length = 225
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 149/233 (63%), Gaps = 11/233 (4%)
Query: 70 MINVGSSPTIPQMGRNXXXXXXXXXXXXXXXXKTRMCNKYNSSEGCKFGDRCHFAHGEWE 129
M+N+ + +P RN KTR+CNK+N++EGCKFGD+CHFAHGEWE
Sbjct: 1 MMNLTPAAPLPPT-RNVAALPHVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWE 59
Query: 130 LGRPTLPPYEDPRGFGQMQSNXXXXXXXXXXXXXXXXXXXXXXXXXXKISINASLAGAII 189
LG+ P ++D R G + KIS+ ASLAGAII
Sbjct: 60 LGKHIAPSFDDHRAMGPPGAGRLAGRMEPPGPAASFGANSTA-----KISVEASLAGAII 114
Query: 190 GKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMVHELILSVSSVSG 249
GK GVNSKQICR TGAKLSIREH+SDPNL+NIELEGSF+QI +AS MV +L+L++ +S
Sbjct: 115 GKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTL-QMSA 173
Query: 250 PPAKNFSSQHSAP---GSNLKTKLCENFAKGSCTFGERCHFAHGTDELRRPGM 299
PP K AP GSN KTKLCENFAKGSCTFG+RCHFAHG ELR+ G+
Sbjct: 174 PP-KTTPGVPGAPASHGSNFKTKLCENFAKGSCTFGDRCHFAHGASELRKSGV 225
>Glyma03g30020.2
Length = 225
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/206 (57%), Positives = 142/206 (68%), Gaps = 20/206 (9%)
Query: 102 KTRMCNKYNSSEGCKFGDRCHFAHGEWELGRPTLPPYED-----PRGFGQMQSNXXXXXX 156
KTR+CNK+N++EGCKFGD+CHFAHGEWELG+ P ++D P G G++
Sbjct: 32 KTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHHAMGPPGAGRLAGRMEPPGP 91
Query: 157 XXXXXXXXXXXXXXXXXXXXKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDP 216
KIS+ ASLAGAIIGK GVNSKQICR TGAKLSIREH+SDP
Sbjct: 92 AASFGANSTA----------KISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDP 141
Query: 217 NLKNIELEGSFDQINQASAMVHELILSVSSVSGPPAKNFSSQHSAP---GSNLKTKLCEN 273
NL+NIELEGSF+QI +AS MV +L+L++ +S PP K AP GSN KTKLCEN
Sbjct: 142 NLRNIELEGSFEQIKEASNMVKDLLLTL-QMSAPP-KTTPGVPGAPASHGSNFKTKLCEN 199
Query: 274 FAKGSCTFGERCHFAHGTDELRRPGM 299
FAKGSCTFG+RCHFAHG ELR+ G+
Sbjct: 200 FAKGSCTFGDRCHFAHGASELRKSGV 225
>Glyma09g17210.1
Length = 143
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 17/109 (15%)
Query: 188 IIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMVHELILSVSSV 247
IIG GVNSKQIC ++ + + L+N++L + +N + +++ L V+
Sbjct: 44 IIG--GVNSKQICP--------QKKELNFQLENMKLIQILETLN-SRELLNRLRKQVTWC 92
Query: 248 SGPPAKNFSSQHSAPGSNLKTKLCENFAKGSCTFGERCHFAHGTDELRR 296
S P GSN KTKLCENFAKGSCT GERC+FAH ELR+
Sbjct: 93 SWCPCP------LPLGSNFKTKLCENFAKGSCTSGERCYFAHRAAELRK 135