Miyakogusa Predicted Gene

Lj5g3v2292540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2292540.1 tr|D7KE87|D7KE87_ARALL High mobility group family
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARA,62.32,6e-17,HIGHMOBLTY12,NULL; HMG-box,High mobility group,
superfamily; HMG_box,High mobility group, superfamil,CUFF.57220.1
         (107 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g44040.1                                                       110   4e-25
Glyma20g38760.1                                                       106   5e-24
Glyma04g12530.1                                                        52   1e-07
Glyma06g48010.1                                                        51   3e-07
Glyma04g02210.1                                                        47   6e-06

>Glyma10g44040.1 
          Length = 354

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 66/96 (68%)

Query: 1   MSRTIGDLWNKLQESEKTVYQEKAMKDKERYHAEMEDYHEKLKMDLVISDAVPLRQRFPE 60
           +SR IG+LWNKL+ESEKTVYQEKAMKDKERY AEMEDY EK KM  VISDAVPL+QR PE
Sbjct: 234 ISRMIGELWNKLKESEKTVYQEKAMKDKERYRAEMEDYREKQKMGQVISDAVPLQQRLPE 293

Query: 61  PXXXXXXXXXXXXXXXXXXXQTVEESSFGESDYEVD 96
           P                   QT EESS G+  +++D
Sbjct: 294 PDADMLDVDIKMDEAEGDSPQTPEESSGGKRGFDMD 329


>Glyma20g38760.1 
          Length = 326

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 69/107 (64%), Gaps = 15/107 (14%)

Query: 1   MSRTIGDLWNKLQESEKTVYQEKAMKDKERYHAEMEDYHEKLKMDLVISDAVPLRQRFPE 60
           +SR IG+LWNKL+ESEKTVYQEKAMKDKERY  EMEDY EKLKM  VISDAVPL+QR PE
Sbjct: 208 ISRMIGELWNKLKESEKTVYQEKAMKDKERYRVEMEDYREKLKMGPVISDAVPLQQRLPE 267

Query: 61  PXXXXXXXXXXXXXXXXXXXQTVEESSFGESDYEVDKAGERDFNVDS 107
           P                   QT EESS G         G+R F++D+
Sbjct: 268 P------DTDMLDEAEGDSPQTPEESSSG---------GKRGFDMDA 299


>Glyma04g12530.1 
          Length = 313

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 29/38 (76%)

Query: 1   MSRTIGDLWNKLQESEKTVYQEKAMKDKERYHAEMEDY 38
           +S+ IG LWN L E+E+ VYQEK M+DKERY  E+ +Y
Sbjct: 266 ISKRIGFLWNNLSEAERQVYQEKGMRDKERYRTELMEY 303


>Glyma06g48010.1 
          Length = 339

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 29/38 (76%)

Query: 1   MSRTIGDLWNKLQESEKTVYQEKAMKDKERYHAEMEDY 38
           +S+ IG LWN L E+E+ VYQEK ++DKERY  E+ +Y
Sbjct: 292 ISKRIGFLWNNLSEAERQVYQEKGIRDKERYRTELMEY 329


>Glyma04g02210.1 
          Length = 322

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 1   MSRTIGDLWNKLQESEKTVYQEKAMKDKERYHAEMEDYHEKLKM 44
            ++ IG  WN L   E+ VYQ   ++DKERY  E+ +Y EK+K+
Sbjct: 270 FTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELTEYKEKMKL 313