Miyakogusa Predicted Gene

Lj5g3v2290070.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2290070.3 Non Chatacterized Hit- tr|I1LFF7|I1LFF7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.11683
PE,86.96,0,Clp1,Pre-mRNA cleavage complex II Clp1;
CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P,NULL,CUFF.60765.3
         (439 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g43930.1                                                       791   0.0  
Glyma20g38670.1                                                       789   0.0  
Glyma09g07820.1                                                       399   e-111
Glyma15g21790.1                                                       170   3e-42
Glyma12g15580.1                                                        96   7e-20
Glyma05g08830.2                                                        53   8e-07
Glyma05g08830.1                                                        53   8e-07
Glyma04g34690.1                                                        51   3e-06

>Glyma10g43930.1 
          Length = 432

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/418 (91%), Positives = 404/418 (96%), Gaps = 1/418 (0%)

Query: 22  TIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYG 81
           TIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYG
Sbjct: 11  TIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYG 70

Query: 82  ATIEMDGSTETDYTADETPMVSYVNVHAVLEGRRSRAKASPSDDPESSQGPRVIVVGPTD 141
           ATIEMDG+TETDYTADETPMVSYVNVHAVL+GRRSRAKAS  DD  SSQGPRVIVVGPTD
Sbjct: 71  ATIEMDGATETDYTADETPMVSYVNVHAVLDGRRSRAKASSPDDSVSSQGPRVIVVGPTD 130

Query: 142 SGKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEIPL 201
           SGKSTLSRMLLSWAAKQGWKPTF+DLDIGQGSITIPGCIAATPIEMPIDPVEGIPLE+PL
Sbjct: 131 SGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEMPL 190

Query: 202 VYFHGHSAPSNNTAEIYRVIVKELAGILERQFAGNAESRAAGMVINTMGWIEGLGYELLL 261
           VYF+GH+ PSNN  E+Y+V+VKELAG++ERQF GNAESRA+GMVINTMGWIEG+GY+LLL
Sbjct: 191 VYFYGHATPSNNV-ELYKVLVKELAGMIERQFTGNAESRASGMVINTMGWIEGVGYDLLL 249

Query: 262 HSIRTFKANVVLVLGQEKLCSMLKNELKGEPKVDVVKLQRSGGVVSRNSKVRQNARSYKI 321
           H+IRTFKANVVLVLGQEKLCSMLK+ LK EPKVDVVKLQRSGGVVSRN+KVRQ ARSY+I
Sbjct: 250 HAIRTFKANVVLVLGQEKLCSMLKDVLKSEPKVDVVKLQRSGGVVSRNAKVRQKARSYRI 309

Query: 322 REYFYGLGNDLSPHSNIANFSDLFVYRIGGGPQAPRSALPIGAEPAADPTRLVPVNINHD 381
           REYFYGL NDLSPHSNIANFSDLFVYR+GGGPQAPRSALPIGAEPAADPTR+VPVNIN D
Sbjct: 310 REYFYGLSNDLSPHSNIANFSDLFVYRVGGGPQAPRSALPIGAEPAADPTRVVPVNINRD 369

Query: 382 LLHAVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSAGELPSKYLIIGNI 439
           LLH VLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSAGELPSKYLI+G++
Sbjct: 370 LLHLVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSAGELPSKYLIMGSL 427


>Glyma20g38670.1 
          Length = 438

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/418 (90%), Positives = 404/418 (96%), Gaps = 1/418 (0%)

Query: 22  TIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYG 81
           TIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYG
Sbjct: 17  TIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYG 76

Query: 82  ATIEMDGSTETDYTADETPMVSYVNVHAVLEGRRSRAKASPSDDPESSQGPRVIVVGPTD 141
           ATIEMDG+TETDYTADETPMVSYVNVHAVL+GRRSRAKAS  DD  SSQGPRVIVVGPTD
Sbjct: 77  ATIEMDGATETDYTADETPMVSYVNVHAVLDGRRSRAKASSPDDSGSSQGPRVIVVGPTD 136

Query: 142 SGKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEIPL 201
           SGKSTLSRMLLSWAAKQGWKPTF+DLDIGQGSITIPGCIAATPIEMPIDPVEGIPLE+PL
Sbjct: 137 SGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEMPL 196

Query: 202 VYFHGHSAPSNNTAEIYRVIVKELAGILERQFAGNAESRAAGMVINTMGWIEGLGYELLL 261
           VY++GH+ PSNN  E+Y+V+VKELAG++ERQF GNAESRA+GMVINTMGWIEG+GY+LLL
Sbjct: 197 VYYYGHATPSNNV-ELYKVLVKELAGMIERQFTGNAESRASGMVINTMGWIEGVGYDLLL 255

Query: 262 HSIRTFKANVVLVLGQEKLCSMLKNELKGEPKVDVVKLQRSGGVVSRNSKVRQNARSYKI 321
           H+IRTFKANVVLVLGQEKLCSMLK+ LK EPKVDVVKLQRSGGVVSRN+KVRQ ARSY+I
Sbjct: 256 HAIRTFKANVVLVLGQEKLCSMLKDVLKSEPKVDVVKLQRSGGVVSRNAKVRQKARSYRI 315

Query: 322 REYFYGLGNDLSPHSNIANFSDLFVYRIGGGPQAPRSALPIGAEPAADPTRLVPVNINHD 381
           REYFYGL NDLSPHSNIANFSDLFVYR+GGGPQAPRSALPIGAEPAADPTR+VPVNIN D
Sbjct: 316 REYFYGLSNDLSPHSNIANFSDLFVYRVGGGPQAPRSALPIGAEPAADPTRVVPVNINRD 375

Query: 382 LLHAVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSAGELPSKYLIIGNI 439
           LLH VLAVSFAKEPDEIISSNVAGFIYVTD+DIQRKKITYLAPSAGELPSKYLI+G++
Sbjct: 376 LLHLVLAVSFAKEPDEIISSNVAGFIYVTDVDIQRKKITYLAPSAGELPSKYLIMGSL 433


>Glyma09g07820.1 
          Length = 278

 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/278 (72%), Positives = 220/278 (79%), Gaps = 41/278 (14%)

Query: 22  TIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYG 81
           TIKQVKLERESELRIE                 IFGTELP EIWLNFPPRLKFAVFTWYG
Sbjct: 17  TIKQVKLERESELRIE-----------------IFGTELPLEIWLNFPPRLKFAVFTWYG 59

Query: 82  ATIEMDGSTETDYTADETPMVSYVNVHAVLEGRRSRAKASPSDDPESSQGPRVIVVGPTD 141
           ATIEMDG+TETDYTAD TPMVSYVN+H VL+GRRSRAKASP DD  SSQGPRVIVVGPTD
Sbjct: 60  ATIEMDGATETDYTADVTPMVSYVNLHVVLDGRRSRAKASPPDDSGSSQGPRVIVVGPTD 119

Query: 142 SGKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEIPL 201
           SGKSTLSRMLLS A KQGWKPTF+DLDIGQGSITIP CIAATPIEM ID VEGIPLE+PL
Sbjct: 120 SGKSTLSRMLLSRAVKQGWKPTFVDLDIGQGSITIPKCIAATPIEMSIDLVEGIPLEMPL 179

Query: 202 VYFHGHSAPSNN------------------------TAEIYRVIVKELAGILERQFAGNA 237
           VY++GH+ PS                          T ++Y+V+VKELAG+++RQF GNA
Sbjct: 180 VYYYGHTTPSWQHYINFHWFELLKSSVVHEGNENPITKQLYKVLVKELAGVIDRQFTGNA 239

Query: 238 ESRAAGMVINTMGWIEGLGYELLLHSIRTFKANVVLVL 275
           ESRA GMVINTMGWIEG+GY+LLLH+IRTFKANVVLVL
Sbjct: 240 ESRALGMVINTMGWIEGVGYDLLLHAIRTFKANVVLVL 277


>Glyma15g21790.1 
          Length = 136

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/90 (88%), Positives = 85/90 (94%), Gaps = 2/90 (2%)

Query: 22  TIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYG 81
           TIKQVKLERES+LRI+VGNDAPLRLRLLNGTAE FGTELPPEIWLNFPP LKF VFTWYG
Sbjct: 17  TIKQVKLERESKLRIQVGNDAPLRLRLLNGTAENFGTELPPEIWLNFPPSLKFVVFTWYG 76

Query: 82  ATIEMDGSTETDYTADETPMVSYVN--VHA 109
           ATIEMDG+TETDYTADETPMVSY+N  +HA
Sbjct: 77  ATIEMDGATETDYTADETPMVSYLNLLIHA 106


>Glyma12g15580.1 
          Length = 187

 Score = 96.3 bits (238), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 68/98 (69%), Gaps = 13/98 (13%)

Query: 203 YFHGHSAPSNNTAEIYRVIVKELAGILERQFAGNAESRAAGMVINTMGWIEGLGYELLLH 262
           Y +      +N  E+Y+V++K+LA +++ QF GNA+SRA+GMVINTMGWIEG+ Y+LL+H
Sbjct: 78  YLNVEFFFCSNNVELYKVLLKDLAVMIDMQFTGNAKSRASGMVINTMGWIEGICYDLLIH 137

Query: 263 SIRTFKANVVLVLGQEKLCSMLKNELKGEPKVDVVKLQ 300
           +    +++V           MLK+ LK EPKVDVVKLQ
Sbjct: 138 AFC--RSSV-----------MLKDVLKSEPKVDVVKLQ 162


>Glyma05g08830.2 
          Length = 372

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 25/236 (10%)

Query: 127 ESSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIPGCIAATPIE 186
            SS  P  ++ G  + GK+T SR LL+    +  K  ++D D+GQ   T P  ++ T I 
Sbjct: 24  HSSMPPIALICGAKNCGKTTFSRYLLNVLLHKYTKVAYLDTDVGQPEFTPPAFLSLT-IV 82

Query: 187 MPIDPVEGIP-LEIPLVYFHGHSAPSNNTAEIYRVIVKELAGILERQFA-----GNAESR 240
             + P   +P L+ P          S      Y   V  +    ++++       N    
Sbjct: 83  HKVTPDLTVPCLKTPERCLFFGDVSSKRDPSTYLSYVFAIYDYYQKKYCIYEKGENPCKV 142

Query: 241 AAGMVINTMGWIEGLGYELLLHSIRTFKANVVLVLGQEKLCSMLKNELKGE--------P 292
              +++NT GW++G+GY++L+  ++      V+ +    + S  KN   GE         
Sbjct: 143 KLPLIVNTPGWVKGVGYDVLVDMLKYISPTHVVKIS---IASEKKNLPAGEFWLDGEHDE 199

Query: 293 KVDVVKLQRSG-GVVSRNSKVRQNA---RSYKIREYFYGLGNDLSPHSNIANFSDL 344
            ++++++  +    ++R+  V+++A   R  +I  YF       S  SNI+   +L
Sbjct: 200 TINLIEINSAHQDSLNRSLLVQKDARLLRDLRIMAYF---KQCFSSDSNISTIKEL 252


>Glyma05g08830.1 
          Length = 372

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 25/236 (10%)

Query: 127 ESSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIPGCIAATPIE 186
            SS  P  ++ G  + GK+T SR LL+    +  K  ++D D+GQ   T P  ++ T I 
Sbjct: 24  HSSMPPIALICGAKNCGKTTFSRYLLNVLLHKYTKVAYLDTDVGQPEFTPPAFLSLT-IV 82

Query: 187 MPIDPVEGIP-LEIPLVYFHGHSAPSNNTAEIYRVIVKELAGILERQFA-----GNAESR 240
             + P   +P L+ P          S      Y   V  +    ++++       N    
Sbjct: 83  HKVTPDLTVPCLKTPERCLFFGDVSSKRDPSTYLSYVFAIYDYYQKKYCIYEKGENPCKV 142

Query: 241 AAGMVINTMGWIEGLGYELLLHSIRTFKANVVLVLGQEKLCSMLKNELKGE--------P 292
              +++NT GW++G+GY++L+  ++      V+ +    + S  KN   GE         
Sbjct: 143 KLPLIVNTPGWVKGVGYDVLVDMLKYISPTHVVKIS---IASEKKNLPAGEFWLDGEHDE 199

Query: 293 KVDVVKLQRSG-GVVSRNSKVRQNA---RSYKIREYFYGLGNDLSPHSNIANFSDL 344
            ++++++  +    ++R+  V+++A   R  +I  YF       S  SNI+   +L
Sbjct: 200 TINLIEINSAHQDSLNRSLLVQKDARLLRDLRIMAYF---KQCFSSDSNISTIKEL 252


>Glyma04g34690.1 
          Length = 347

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 31/239 (12%)

Query: 127 ESSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIPGCIAATPIE 186
            SS  P  ++ G  + GK+T SR LL+    +  K  ++D D+GQ   T P  ++ T I 
Sbjct: 14  HSSMLPIALICGAKNCGKTTFSRYLLNILLNKYTKVAYLDTDVGQPEFTPPAFLSLT-IV 72

Query: 187 MPIDPVEGIP-LEIP--LVYFHGHSA---PSNNTA---EIYRVIVKELAGILERQFAGNA 237
             + P   +P L+ P   ++F   S    PS   +    IY    KE     + ++    
Sbjct: 73  HKVTPDLTVPCLKTPERCLFFGDVSCKRDPSTYLSYVFAIYNHYRKEYCISDKGEYPHKI 132

Query: 238 ESRAAGMVINTMGWIEGLGYELLLHSIRTFKANVVLVLGQEKLCSMLKNELKGE------ 291
           E     +++NT GW++G+GY++L+  ++      V+ +    + S  KN   GE      
Sbjct: 133 E---VPLIVNTPGWVKGVGYDVLVDMLKYICPTHVVKIS---ISSEKKNLPAGEFWSDGE 186

Query: 292 --PKVDVVKLQRS-GGVVSRNSKVRQNA---RSYKIREYFYGLGNDLSPHSNIANFSDL 344
               ++++++  +    ++R+  V+++A   R  +I  YF       S  SNI+   +L
Sbjct: 187 HDETINIIEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQC---FSSESNISTIKEL 242