Miyakogusa Predicted Gene

Lj5g3v2263950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2263950.1 tr|A9T9J7|A9T9J7_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,46.9,3e-17,G-patch,G-patch domain; coiled-coil,NULL; glycine
rich nucleic binding domain,G-patch domain; seg,NU,CUFF.57122.1
         (129 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g43500.1                                                        97   5e-21
Glyma03g38720.1                                                        51   4e-07
Glyma19g41310.1                                                        50   5e-07

>Glyma10g43500.1 
          Length = 123

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/131 (50%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 1   MEDMSGGSXXXXXXXXXINSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRG 60
           ME+MSG           INSSNIGFQLLKK GWKEGTGLG+SEQGRLEPVET VKNNKRG
Sbjct: 1   MEEMSG-------LATAINSSNIGFQLLKKHGWKEGTGLGVSEQGRLEPVETHVKNNKRG 53

Query: 61  LGADKVKKMAVKS--DDSDAXXXXXXXXXXXXXXXXXALSKRXXXXXXXXXXXXXXXXXX 118
           LGADK KK  VK+  D SD+                  LSKR                  
Sbjct: 54  LGADKAKKKVVKAKPDQSDS-SKGNNQQDHLPQKKSKTLSKRMRKMQEFEKKMREKEFER 112

Query: 119 XXXXXXWPENV 129
                 WPENV
Sbjct: 113 AFFREFWPENV 123


>Glyma03g38720.1 
          Length = 304

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 1/45 (2%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLG 62
           I SSNIGF+LL+K GWK G GLG  EQG +EP+++ +++ + G+G
Sbjct: 64  ITSSNIGFKLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPRLGIG 107


>Glyma19g41310.1 
          Length = 304

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 1/45 (2%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLG 62
           I SSNIGF+LL+K GWK G GLG  EQG +EP+++ +++ + G+G
Sbjct: 64  ITSSNIGFKLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPRLGVG 107