Miyakogusa Predicted Gene

Lj5g3v2258590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2258590.1 Non Chatacterized Hit- tr|I1LF87|I1LF87_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20745
PE,73.08,0.00000000003,seg,NULL; TCP,Transcription factor,
TCP,CUFF.57098.1
         (259 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g43190.1                                                        72   7e-13
Glyma20g23700.1                                                        66   4e-11
Glyma09g42140.1                                                        50   2e-06
Glyma16g05840.1                                                        48   9e-06

>Glyma10g43190.1 
          Length = 246

 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 42/52 (80%), Gaps = 7/52 (13%)

Query: 70  MSSSDGTTNG----SMIDPQRTNQQQQLSVKKPPSKDRHSKVDGRGRRIRMP 117
           MS+SD TTNG    ++ID QR   QQ L+VKKPPSKDRHSKVDGRGRRIRMP
Sbjct: 1   MSNSDATTNGVSNGAIIDAQR---QQALAVKKPPSKDRHSKVDGRGRRIRMP 49


>Glyma20g23700.1 
          Length = 242

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 43/51 (84%), Gaps = 3/51 (5%)

Query: 70  MSSSDGTTNGSMIDPQRTNQQ---QQLSVKKPPSKDRHSKVDGRGRRIRMP 117
           MS+SDGTTNG++ + QR  QQ   + L+VKKPPSKDRHSKVDGRGRRIRMP
Sbjct: 1   MSNSDGTTNGAITEAQRQQQQQGGKALAVKKPPSKDRHSKVDGRGRRIRMP 51


>Glyma09g42140.1 
          Length = 208

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 29/48 (60%), Gaps = 17/48 (35%)

Query: 70  MSSSDGTTNGSMIDPQRTNQQQQLSVKKPPSKDRHSKVDGRGRRIRMP 117
           MS+SDG TN                  KPPSKDRHSKVDGRGRRIRMP
Sbjct: 1   MSNSDGATNA-----------------KPPSKDRHSKVDGRGRRIRMP 31


>Glyma16g05840.1 
          Length = 345

 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 26/29 (89%)

Query: 89  QQQQLSVKKPPSKDRHSKVDGRGRRIRMP 117
           QQQQL+ K+  +KDRH+KV+GRGRRIRMP
Sbjct: 61  QQQQLAPKRSSNKDRHTKVEGRGRRIRMP 89