Miyakogusa Predicted Gene
- Lj5g3v2244650.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2244650.1 tr|A0B9X7|A0B9X7_ORYSA OSIGBa0135C09.3 protein
OS=Oryza sativa GN=OSIGBa0135C09.3 PE=4 SV=1,33.56,2e-19,PREDICTED
PROTEIN (FRAGMENT),NULL; GAG-POL-RELATED RETROTRANSPOSON,NULL;
gag_pre-integrs,GAG-pre-int,CUFF.57044.1
(151 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma18g27720.1 103 8e-23
Glyma10g21320.1 101 3e-22
Glyma08g26190.1 100 7e-22
Glyma05g01960.1 85 2e-17
Glyma07g34840.1 85 3e-17
Glyma02g14000.1 73 1e-13
Glyma06g40940.1 72 3e-13
Glyma03g00550.1 71 6e-13
Glyma15g32290.1 70 9e-13
Glyma16g14490.1 67 8e-12
Glyma15g26820.1 67 9e-12
Glyma09g26090.1 66 1e-11
Glyma01g24090.1 65 2e-11
Glyma20g23530.1 63 9e-11
Glyma10g22170.1 63 1e-10
Glyma02g36930.1 53 1e-07
Glyma03g04980.1 51 5e-07
>Glyma18g27720.1
Length = 1252
Score = 103 bits (257), Expect = 8e-23, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 77/118 (65%), Gaps = 8/118 (6%)
Query: 24 LLLQIKMKTNRMFVLHTMPKKSEQSSLDQCLQITSVKEDVLTLWHRRFGHLSYQNLMKLE 83
L+ ++ M NRMF+L+ Q+ + +CL+ + D LWH RFGHL++ L +L
Sbjct: 439 LIAKVPMSKNRMFLLNI------QNDVAKCLK--ACYTDSSWLWHLRFGHLNFDGLERLA 490
Query: 84 KQKLVTGLPKLTGNGEICSTCMVGKQQRKAFPKQSKWKSTQRLQLLHADLCGPITPQS 141
K+++V GLP + ++C C++GKQ RK+FPK+S ++T+ L+L+H D+CGPI P S
Sbjct: 491 KKEMVRGLPSINHPDQLCGGCLIGKQFRKSFPKESTTRATKPLELIHTDVCGPIKPNS 548
>Glyma10g21320.1
Length = 1348
Score = 101 bits (251), Expect = 3e-22, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 76/118 (64%), Gaps = 8/118 (6%)
Query: 24 LLLQIKMKTNRMFVLHTMPKKSEQSSLDQCLQITSVKEDVLTLWHRRFGHLSYQNLMKLE 83
L+ ++ M NRMF+L+ Q+ + +CL+ + D LWH RFGHL++ L +L
Sbjct: 439 LIAKVPMSKNRMFLLNI------QNDVAKCLK--ACYTDSSWLWHLRFGHLNFDGLERLA 490
Query: 84 KQKLVTGLPKLTGNGEICSTCMVGKQQRKAFPKQSKWKSTQRLQLLHADLCGPITPQS 141
K+++V GLP + ++C C++GKQ K+FPK+S ++T+ L+L+H D+CGPI P S
Sbjct: 491 KKEMVRGLPSINHPDQLCEGCLIGKQFHKSFPKESTTRATKPLELIHTDVCGPIKPNS 548
>Glyma08g26190.1
Length = 1269
Score = 100 bits (248), Expect = 7e-22, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 76/118 (64%), Gaps = 8/118 (6%)
Query: 24 LLLQIKMKTNRMFVLHTMPKKSEQSSLDQCLQITSVKEDVLTLWHRRFGHLSYQNLMKLE 83
L+ ++ M NRMF+L+ Q+ + +CL+ + D LWH RFGHL++ L +L
Sbjct: 439 LIAKVPMSKNRMFLLNI------QNDVAKCLK--ACYTDSSWLWHLRFGHLNFDGLERLA 490
Query: 84 KQKLVTGLPKLTGNGEICSTCMVGKQQRKAFPKQSKWKSTQRLQLLHADLCGPITPQS 141
K+++V GL + ++C C++GKQ RK+FPK+S ++T+ L+L+H D+CGPI P S
Sbjct: 491 KKEMVRGLSSINHPDQLCEGCLIGKQFRKSFPKESTTRATKPLELIHTDVCGPIKPNS 548
>Glyma05g01960.1
Length = 1108
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 80/144 (55%), Gaps = 10/144 (6%)
Query: 4 KGLTFLIKNNVCKVFHEEKGLLLQIKMKTNRMFVLHTMPKKSEQSSLDQ-CLQITSVKED 62
KG ++N + +VF L+L+ + NR F K E ++Q C T E+
Sbjct: 244 KGFMTKLENKMLRVFDRNHKLILKSPLSKNRTF-------KIEIDVIEQKCFTTTVNSEE 296
Query: 63 VLTLWHRRFGHLSYQNLMKLEKQKLVTGLPKLTGNGEICSTCMVGKQQRKAFPKQSKWKS 122
LWH RFGHL++++L+KL +++V GLP++ E+C C+ KQ R F + ++
Sbjct: 297 --WLWHYRFGHLNFRDLIKLNSREMVLGLPQIKPPSEVCDGCLQCKQSRSTFKQNVPIRA 354
Query: 123 TQRLQLLHADLCGPITPQSSTAGR 146
++L+++++D+CGP+ +S R
Sbjct: 355 KEKLEVIYSDVCGPMQTESLGGNR 378
>Glyma07g34840.1
Length = 1562
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 14/154 (9%)
Query: 1 MQGKGLTFLIKNNVCKVFHEE--KGLLLQIKM-KTNRMFVLHTMPKKSEQSSLDQCLQIT 57
M + T + VCK+ + + + Q+KM K+NR F L+ L I
Sbjct: 401 MMERDYTLHFEGGVCKILDNKNKRSEIAQVKMNKSNRSFPLN----------LKYATNIA 450
Query: 58 -SVKEDVLTLWHRRFGHLSYQNLMKLEKQKLVTGLPKLTGNGEICSTCMVGKQQRKAFPK 116
V+ D LWHRRFGH + L L ++ ++ LP + N E+C C++GKQ R F
Sbjct: 451 MKVQVDDSWLWHRRFGHFNSHALKLLHEKNMIRDLPSIKENNEVCEGCLLGKQHRFPFST 510
Query: 117 QSKWKSTQRLQLLHADLCGPITPQSSTAGRGTFL 150
W++ L+L+H D+CGP+ S R L
Sbjct: 511 SGAWRAKDLLELIHTDVCGPMRTPSHGNNRYFIL 544
>Glyma02g14000.1
Length = 1050
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 52 QCLQITSVKEDVLTLWHRRFGHLSYQNLMKLEKQKLVTGLPKLTGNGEICSTCMVGKQQR 111
QCL + E +WH RFGHL++++L +L+ +K+V GLP++ ++C C V KQ R
Sbjct: 351 QCLAASISDES--WMWHHRFGHLNFRSLSELKSEKMVHGLPQIEIPKQLCVECCVSKQPR 408
Query: 112 KAFPKQSKWKSTQRLQLLHADLCGPITPQS 141
+F + KS ++L++++ D+CGP +S
Sbjct: 409 NSFKSEIPIKSKRKLEVIYYDVCGPFEMKS 438
>Glyma06g40940.1
Length = 994
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 12/153 (7%)
Query: 1 MQGKGLTFLIKNNVCKVFHEE--KGLLLQIKM-KTNRMFVLHTMPKKSEQSSLDQCLQIT 57
M KG T + VCK+ + + + Q+KM K+N+ F L+ + +
Sbjct: 760 MMEKGYTLHFEGGVCKILDNKNKRSEIAQVKMNKSNKSFPLNLKYATN---------IVM 810
Query: 58 SVKEDVLTLWHRRFGHLSYQNLMKLEKQKLVTGLPKLTGNGEICSTCMVGKQQRKAFPKQ 117
V+ D LWHRRFGH + L L ++ ++ L + N E+C C++GKQ R F
Sbjct: 811 KVQVDDSWLWHRRFGHFNTHALKLLHEKNMMRDLLSIKENNEVCEGCLLGKQHRFPFSTS 870
Query: 118 SKWKSTQRLQLLHADLCGPITPQSSTAGRGTFL 150
W++ L+L+H D+ RG FL
Sbjct: 871 GAWRAKDLLELIHTDVYVKRHKLEDKTIRGIFL 903
>Glyma03g00550.1
Length = 490
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 66 LWHRRFGHLSYQNLMKLEKQKLVTGLPKLTGNGEICSTCMVGKQQRKAFPKQSKWKSTQR 125
LWH+R GH Q ++ ++K+ + G P + + C+ C GKQ R FPK S W+++Q
Sbjct: 72 LWHKRLGHCHIQIMLNMKKKHMTRGPPVFSDHLPNCNACQFGKQNRMPFPK-STWRASQE 130
Query: 126 LQLLHADLCGP-ITPQSSTAG 145
LQL+H D+ GP TP AG
Sbjct: 131 LQLIHIDVAGPQRTPSLQVAG 151
>Glyma15g32290.1
Length = 2173
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 4 KGLTFLIKNNVCKVFHEEKGLLLQIKMKTNRMFVLHTMPKKSEQSSLDQCLQITSVKEDV 63
+G + C V +E+ +L++ + ++ P+++ SS CL S KED
Sbjct: 637 EGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLW--TPQETSYSST--CL---SSKEDE 689
Query: 64 LTLWHRRFGHLSYQNLMKLEKQKLVTGLPKL-TGNGEICSTCMVGKQQRKAFPKQSKWKS 122
+ +WH+RFGHL + + K+ Q +V G+P L G IC C +GKQ + + K +
Sbjct: 690 VKIWHQRFGHLHLRGMKKIIDQGVVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTT 749
Query: 123 TQRLQLLHADLCGPITPQSSTAGRGTFL 150
++ L+LLH DL GP+ +S R ++
Sbjct: 750 SRVLELLHMDLMGPMQVESLGGKRYAYV 777
>Glyma16g14490.1
Length = 2156
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 42 PKKSEQSSLDQCLQITSVKEDVLTLWHRRFGHLSYQNLMKLEKQKLVTGLPKL-TGNGEI 100
P+++ SS CL S KED + +WH+RFGHL + + K+ + V G+P L G I
Sbjct: 668 PQETSYSST--CL---SSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI 722
Query: 101 CSTCMVGKQQRKAFPKQSKWKSTQRLQLLHADLCGPITPQSSTAGRGTFL 150
C C +GKQ + + K +++ L+LLH DL GP+ +S R ++
Sbjct: 723 CGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYV 772
>Glyma15g26820.1
Length = 1563
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 58 SVKEDVLTLWHRRFGHLSYQNLMKLEKQKLVTGLPKL-TGNGEICSTCMVGKQQRKAFPK 116
S KED + +WH+RFGHL + + K+ + V G+P L G IC C +GKQ + + K
Sbjct: 683 SSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQK 742
Query: 117 QSKWKSTQRLQLLHADLCGPITPQSSTAGRGTFL 150
+++ L+LLH DL GP+ +S R ++
Sbjct: 743 LQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYV 776
>Glyma09g26090.1
Length = 2169
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 8/148 (5%)
Query: 4 KGLTFLIKNNVCKVFHEEKGLLLQIKMKTNRMFVLHTMPKKSEQSSLDQCLQITSVKEDV 63
+G + C V +E+ +L++ + ++ P+++ SS CL S KED
Sbjct: 637 EGFNVNFTKSECLVTNEKSKVLMKGSRSKDNCYLW--TPQETSYSST--CL---SSKEDE 689
Query: 64 LTLWHRRFGHLSYQNLMKLEKQKLVTGLPKL-TGNGEICSTCMVGKQQRKAFPKQSKWKS 122
+ +WH+RFGHL + + K+ + V G+P L G IC C +GKQ + + + +
Sbjct: 690 VKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQELQHQTT 749
Query: 123 TQRLQLLHADLCGPITPQSSTAGRGTFL 150
++ L+LLH DL GP+ +S R ++
Sbjct: 750 SRVLELLHMDLMGPMQVESLGGKRYAYV 777
>Glyma01g24090.1
Length = 2095
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 8/148 (5%)
Query: 4 KGLTFLIKNNVCKVFHEEKGLLLQIKMKTNRMFVLHTMPKKSEQSSLDQCLQITSVKEDV 63
+G + C V +E+ +L++ + ++ P+++ SS CL S KED
Sbjct: 636 EGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLW--TPQETSYSST--CL---SSKEDE 688
Query: 64 LTLWHRRFGHLSYQNLMKLEKQKLVTGLPKL-TGNGEICSTCMVGKQQRKAFPKQSKWKS 122
+ LWH+RF HL + + K+ + V G+P L G IC C +GKQ + + K +
Sbjct: 689 VKLWHQRFEHLHLRGMKKIIDKGAVRGIPNLKIEEGRICDECQIGKQVKMSHQKLQHQTT 748
Query: 123 TQRLQLLHADLCGPITPQSSTAGRGTFL 150
++ L+LLH DL GP+ +S R ++
Sbjct: 749 SRVLELLHMDLMGPMQVESLGGKRYAYV 776
>Glyma20g23530.1
Length = 573
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 65 TLWHRRFGHLSYQNLMKLEKQKLVTGLPKLTGNGEICSTCMVGKQQRKAFPKQSKWKSTQ 124
LWH+R GH + LM ++K L L +L C+ C GKQ FP+ W++T+
Sbjct: 26 VLWHKRLGHFHHGALMFMKKNNLAKNLLELEEELPTCAICQYGKQTILHFPQTMTWRATE 85
Query: 125 RLQLLHADLCGPI-TP 139
RLQL+H D+ GP+ TP
Sbjct: 86 RLQLIHTDVEGPMRTP 101
>Glyma10g22170.1
Length = 2027
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 4 KGLTFLIKNNVCKVFHEEKGLLLQIKMKTNRMFVLHTMPKKSEQSSLDQCLQITSVKEDV 63
+G + C V +E+ +L++ + ++ P+++ SS CL S KED
Sbjct: 636 EGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLW--TPQETSYSST--CL---SSKEDE 688
Query: 64 LTLWHRRFGHLSYQNLMKLEKQKLVTGLPKL-TGNGEICSTCMVGKQQRKAFPKQSKWKS 122
+ +W +RFGHL + + K+ + V G+P L G IC C +GKQ + + K +
Sbjct: 689 VRIWDQRFGHLRLRGIKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTT 748
Query: 123 TQRLQLLHADLCGPI 137
++ L+LLH DL GP+
Sbjct: 749 SRVLELLHMDLMGPM 763
>Glyma02g36930.1
Length = 1321
Score = 52.8 bits (125), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 50 LDQCLQITSVKEDVLTLWHRRFGHLSYQNLMKLEKQKLVTGLPKLTGNGEICSTCMVGKQ 109
L +C+ V E+ LWHRR GH+S + + +L + +++ L + E C C+ GKQ
Sbjct: 377 LKRCI----VNEESSMLWHRRLGHISIERIKRLVNEGVLSTLD--FADFETCVDCIKGKQ 430
Query: 110 QRKAFPKQSKWKSTQRLQLLHADLCGP 136
K+ K+ +S+ L+++H D+C P
Sbjct: 431 TNKS--KKGAKRSSNLLEIIHTDICCP 455
>Glyma03g04980.1
Length = 1363
Score = 51.2 bits (121), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 66 LWHRRFGHLSYQNLMKLEKQKLVTGLPKLTGNGEICSTCMVGKQQRKAF-PKQSKWKSTQ 124
LWH R GH+S + L++L KQ+L+ G + + C C+ GK R F Q + K T
Sbjct: 459 LWHMRLGHVSEKGLIELAKQELLCG--DIMERLKFCEHCVYGKACRAKFNAGQQRTKGT- 515
Query: 125 RLQLLHADLCGPITPQSSTAGR 146
L +HADL GP S + R
Sbjct: 516 -LDYVHADLWGPTKTPSHSGAR 536