Miyakogusa Predicted Gene

Lj5g3v2242490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2242490.1 Non Chatacterized Hit- tr|A5AN67|A5AN67_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,45.45,0.00000002,B3,B3 DNA binding domain; no
description,DNA-binding pseudobarrel domain; B3 DNA binding domain,B3
D,CUFF.57029.1
         (162 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g24270.1                                                        53   2e-07
Glyma08g44640.1                                                        52   2e-07
Glyma04g43620.1                                                        47   7e-06

>Glyma20g24270.1 
          Length = 254

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 7/76 (9%)

Query: 86  SIPMGFINKYVTARVTYAILQAKNKEWHVQLCYDREDGSARFLSSGWSKFVRDCELEEGD 145
           S P+  +   +  +  Y  LQ   + W+V+L  +R       LS+GW+ F  + EL+ GD
Sbjct: 179 SSPLPDLKGIIENKEKYLKLQLGERSWNVKLLNNR-------LSAGWTSFASESELQPGD 231

Query: 146 TCVFELVDKEKFVLKV 161
            CVFEL+++E  V KV
Sbjct: 232 VCVFELINREDSVFKV 247


>Glyma08g44640.1 
          Length = 283

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 76  FTITLKNTDRS---IPMGFINKYVTARVTYAILQAKNKEWHVQLCYDREDGSARFLSSGW 132
           FT+ +K++ +    +P   +  Y+     Y  L    + W V+L + +   S  F S+ W
Sbjct: 190 FTVRMKSSSKQHMYLPKDSLKGYIKGGEQYVKLLVGERSWRVKLVHYKNRSSC-FFSANW 248

Query: 133 SKFVRDCELEEGDTCVFELVDKEKFVLKVS 162
             F R+ +L+EGD C F+L++   F L+++
Sbjct: 249 PAFARENDLKEGDACWFQLLNSSCFFLQIT 278


>Glyma04g43620.1 
          Length = 242

 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 77  TITLKNTDRSIPMGFINKYVTARVTYAILQAKNKEWHVQ-LCYDREDGSARFLSSGWSKF 135
           T T++     +   F  K++   V   +     ++W V  +C++   G    L+ GW KF
Sbjct: 143 TCTIQPYRLYVRSHFSKKHLKPNVCMMLQNCNGEQWDVSCVCHNTRYGGM-MLTRGWRKF 201

Query: 136 VRDCELEEGDTCVFELVD-KEKFVLKVS 162
           VRD +L EGD CV EL++     VLK++
Sbjct: 202 VRDNDLSEGDPCVLELIETNPAVVLKLT 229