Miyakogusa Predicted Gene

Lj5g3v2241250.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2241250.1 tr|B7EG35|B7EG35_ORYSJ cDNA clone:J023010F18,
full insert sequence OS=Oryza sativa subsp. japonica
P,72,0.00000000001,no description,PSPTO4464-like domain;
DUF615,Ribosome-associated, YjgA; seg,NULL;
coiled-coil,NULL,CUFF.57018.1
         (297 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g24320.1                                                       322   3e-88
Glyma20g24320.2                                                       315   3e-86

>Glyma20g24320.1 
          Length = 287

 Score =  322 bits (825), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/305 (59%), Positives = 203/305 (66%), Gaps = 31/305 (10%)

Query: 1   MSLQVLRPLRQWPWLHLHH-RGCANAAXXXXXXXXXXXXXPSPPEPTRTTSNPHRFXXXX 59
           MS QVLRPLRQWPW H HH R C   +              +PP  T      HRF    
Sbjct: 1   MSQQVLRPLRQWPWFHHHHHRTCVTLSLHHLL---------TPPPKT-----SHRFSFAT 46

Query: 60  XXXXXXXXNVPQTTTEL---------DSDSESKKSRNELKREARRAVKWGMDLASFSAPQ 110
                     P+  T           DSD E KKSRN+LKREARR VKWGMDLASFS PQ
Sbjct: 47  VAASSR----PKVRTPKSPVPPPPTADSDLEEKKSRNQLKREARRTVKWGMDLASFSPPQ 102

Query: 111 IKRVLRVLSLDEVV-FEALMVVKRLGPDVREGRRRQFSYIGKLLRGADPELMDRLIRATR 169
           IKR+LRV S D ++ FEALM+VKRLGPDVREGRRRQFSYIGKLLR  DPELM+RLI+AT+
Sbjct: 103 IKRILRVASSDHLLLFEALMLVKRLGPDVREGRRRQFSYIGKLLREVDPELMERLIKATK 162

Query: 170 DSDQKELQALTGL--XXXXXXXXXXXXXXXXXXXXXXXNLHDSQATRWFDGLINKDIQIT 227
           DS+QKELQALTGL                         N HD+Q  RWFDGLI+KDI+IT
Sbjct: 163 DSNQKELQALTGLGPDDPEPEDDDDLVESESEEDEEESNWHDNQVARWFDGLISKDIEIT 222

Query: 228 NEVYSIQGVDFDRQELRKLVRRVHVAQERKADNEEDEKKIETAVIGAKKALTRFLRHVSK 287
           NE+YS+QGV+FDRQELRKLVRRVH  QE KADNEE++KKIETA  GAKKAL RFLR +SK
Sbjct: 223 NEIYSVQGVEFDRQELRKLVRRVHNTQEMKADNEEEKKKIETATNGAKKALNRFLRGLSK 282

Query: 288 RIPDE 292
           RIP+E
Sbjct: 283 RIPNE 287


>Glyma20g24320.2 
          Length = 286

 Score =  315 bits (808), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 180/305 (59%), Positives = 202/305 (66%), Gaps = 32/305 (10%)

Query: 1   MSLQVLRPLRQWPWLHLHH-RGCANAAXXXXXXXXXXXXXPSPPEPTRTTSNPHRFXXXX 59
           MS QVLRPLRQWPW H HH R C   +              +PP  T      HRF    
Sbjct: 1   MSQQVLRPLRQWPWFHHHHHRTCVTLSLHHLL---------TPPPKT-----SHRFSFAT 46

Query: 60  XXXXXXXXNVPQTTTEL---------DSDSESKKSRNELKREARRAVKWGMDLASFSAPQ 110
                     P+  T           DSD E KKSRN+LKREARR VKWGMDLASFS PQ
Sbjct: 47  VAASSR----PKVRTPKSPVPPPPTADSDLEEKKSRNQLKREARRTVKWGMDLASFSPPQ 102

Query: 111 IKRVLRVLSLDEVV-FEALMVVKRLGPDVREGRRRQFSYIGKLLRGADPELMDRLIRATR 169
           IKR+LRV S D ++ FEALM+VKRLGPDVREGRRRQFSYIGKLLR  DPELM+RLI+AT+
Sbjct: 103 IKRILRVASSDHLLLFEALMLVKRLGPDVREGRRRQFSYIGKLLREVDPELMERLIKATK 162

Query: 170 DSDQKELQALTGL--XXXXXXXXXXXXXXXXXXXXXXXNLHDSQATRWFDGLINKDIQIT 227
           DS+QKELQALTGL                         N HD+Q  RWFDGLI+KDI+IT
Sbjct: 163 DSNQKELQALTGLGPDDPEPEDDDDLVESESEEDEEESNWHDNQVARWFDGLISKDIEIT 222

Query: 228 NEVYSIQGVDFDRQELRKLVRRVHVAQERKADNEEDEKKIETAVIGAKKALTRFLRHVSK 287
           NE+YS+QGV+FDRQ LRKLVRRVH  QE KADNEE++KKIETA  GAKKAL RFLR +SK
Sbjct: 223 NEIYSVQGVEFDRQ-LRKLVRRVHNTQEMKADNEEEKKKIETATNGAKKALNRFLRGLSK 281

Query: 288 RIPDE 292
           RIP+E
Sbjct: 282 RIPNE 286