Miyakogusa Predicted Gene
- Lj5g3v2220290.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2220290.2 tr|A9S5X8|A9S5X8_PHYPA RNA polymerase II
transcription elongation factor SPT5 OS=Physcomitrella
pate,30.8,4e-17,KOW (Kyprides, Ouzounis, Woese) motif.,KOW;
Translation proteins SH3-like domain,Translation protein,CUFF.56974.2
(788 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma20g24690.1 861 0.0
Glyma10g42360.1 848 0.0
Glyma20g24910.1 310 5e-84
Glyma06g12770.1 197 3e-50
Glyma04g42000.1 197 3e-50
Glyma01g23700.1 86 1e-16
Glyma07g34510.1 64 7e-10
>Glyma20g24690.1
Length = 1420
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/672 (67%), Positives = 508/672 (75%), Gaps = 38/672 (5%)
Query: 1 MTNKGK----QVAGKDSAGKRKANFXXXXXXXXXXXXXXXVVQFFEEAAAVXXXXXXXXX 56
MTNKGK +VAGK SAGKRK F V+QFFE+AA V
Sbjct: 1 MTNKGKGKGKEVAGKGSAGKRKGVFQDDKTGSGCKRNNRSVLQFFEDAADV--------- 51
Query: 57 XXXXXXXXXXXEYETLSTMLNDTNASAKSQSR-PAFVPKEEVVD-EEFDRFLEERYAGGS 114
E + +D + K QS P VPKEE++D EE+DR LEERY S
Sbjct: 52 ----------EESDFSDFSDDDDSDFDKGQSSLPRVVPKEEMLDEEEWDRILEERYKDPS 101
Query: 115 KFSHFADEY-DDKPMDPSSMHPGAKEVTPAIWKVKCTVGRERLSAFCLMQKFADMKKLGT 173
+F F+DE+ DDK MDPSS+H G E+TP+IWKVKCTVGRERLSA CLMQKFAD+ LGT
Sbjct: 102 RFIRFSDEFGDDKGMDPSSIHEGVDELTPSIWKVKCTVGRERLSALCLMQKFADLYSLGT 161
Query: 174 NLKLISAFAVDHMKGFVYMEADKQCDINEACKGLTGIYVTRVQPVPPNEVYHLFSVRKKS 233
LK+ SAF+VDHMKGFVY+EA+KQ DINEAC+G+ GIYVTRV PVP +EVY+LFSVR ++
Sbjct: 162 KLKIKSAFSVDHMKGFVYIEAEKQYDINEACQGIPGIYVTRVAPVPNSEVYNLFSVRSRT 221
Query: 234 PDISEGMRARIKSGNYKGDLPQVAAVS---KKTTVKLIPRVDLQALAAKFGGGNSRQKTA 290
P+ISEGM ARIK GNYKGDL QV +V+ KK TVKLIPR+DLQALAAKFGGG SRQK A
Sbjct: 222 PEISEGMWARIKGGNYKGDLAQVVSVNNTRKKVTVKLIPRIDLQALAAKFGGGYSRQKMA 281
Query: 291 IAAPRLISSSELDEFRPLIQLKRDRDTGKVFEVLDGMMFKDGFVYKKVSPDSLSLWGVVP 350
+ APRLISSSEL+EFRPLIQ+KRDRDTGKVFEVLDG+M KDG+VYKK+SPDSLSLWGVVP
Sbjct: 282 VPAPRLISSSELEEFRPLIQIKRDRDTGKVFEVLDGLMLKDGYVYKKISPDSLSLWGVVP 341
Query: 351 TEEELLKFGTSENNESTDLEWLSQLYGDSKKKRVVRGADXXXXXXXXXXXXXVVNGFELN 410
TE+ELLKFG SENNES DLEWLSQLYGD KKKRV+R V NGFEL
Sbjct: 342 TEDELLKFGPSENNESNDLEWLSQLYGDKKKKRVIRPEKGGGGKGESSSGSGVGNGFELY 401
Query: 411 DLVCFG-----KKDFGVIVSMDKEDCYKILKEGSDGPVAVTLERHQIKSGLFDLKLTAQD 465
DL C KKDFGVIV MDK+D YKILKEGSDGP AVT++RH+IKSGLFDLKLTA D
Sbjct: 402 DLHCMNYFSLYKKDFGVIVGMDKDDIYKILKEGSDGPDAVTVDRHEIKSGLFDLKLTALD 461
Query: 466 RHSKTILVNDNVRVLEGPSKDKQGIVKHIYRGIVFLYNEIEEENCGYFTAKSSVCEKVKH 525
+HSKTILVND VRVLEGP+K KQGIVKHIYRGIVFLY+ EEEN GY T KS+ CEKVK
Sbjct: 462 QHSKTILVNDTVRVLEGPTKGKQGIVKHIYRGIVFLYDGNEEENGGYLTCKSNKCEKVKL 521
Query: 526 GVADCIGKDGEPGPLIFEDPLEDPPTSPRSPLSLKKPWQARENNREFNRGDQDSLFAIGQ 585
V DC GKD EPGPL+FED +SPRSPLS KKPWQARENNREFNRGD +++F IGQ
Sbjct: 522 AVGDCSGKDSEPGPLVFEDQP----SSPRSPLSPKKPWQARENNREFNRGDNNNMFTIGQ 577
Query: 586 TLRIRIGPLKGYLCRVIAIRRSDVTVKLDSQQKVLTVKSEHLSEVQGKXXXXXXXXXXXX 645
TLRIRIGPLKGY+CRVIA+RR+DVTVKLDSQQKVLTVK EHLSEVQGK
Sbjct: 578 TLRIRIGPLKGYICRVIALRRADVTVKLDSQQKVLTVKCEHLSEVQGKSTAISSSGDPDS 637
Query: 646 XXLKPFDLLGTE 657
KPFD+LGTE
Sbjct: 638 SSSKPFDMLGTE 649
>Glyma10g42360.1
Length = 1452
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/679 (66%), Positives = 504/679 (74%), Gaps = 35/679 (5%)
Query: 1 MTNKGK----QVAGKDSAGKRKANFXXXXXXXXXXXXXXXVVQFFEEAAAVXXXXXXXXX 56
MTNKGK +VAGK SAGKRKA F V+QFF++AA V
Sbjct: 1 MTNKGKGKGKEVAGKGSAGKRKAVFYDDKTGVGRKRNKPGVLQFFDDAADVEESDFSDFS 60
Query: 57 XXXXXXXXXXX---EYETLSTMLNDTNASAKS----------QSRPAFVPKEEVVDEE-F 102
+ + +L+ S+ S S P VPKEE+VDEE +
Sbjct: 61 DDDSDFGFWQHFCVSFNLRNDLLDILWLSSSSFVARISYNGQSSLPRVVPKEEMVDEEEW 120
Query: 103 DRFLEERYAGGSKFSHFADEY-DDKPMDPSSMHPGAKEVTPAIWKVKCTVGRERLSAFCL 161
DR LEERY S+F FADE+ DDK MDPSS+H G E+ P IWKVKCTVGRERLSA CL
Sbjct: 121 DRILEERYKDPSRFIRFADEFGDDKGMDPSSIHEGVDELMPYIWKVKCTVGRERLSALCL 180
Query: 162 MQKFADMKKLGTNLKLISAFAVDHMKGFVYMEADKQCDINEACKGLTGIYVTRVQPVPPN 221
MQKFAD+ LGT LK+ SAFAVDHMKGFVY+EA+KQ DINEAC+G+ GIYVTRV PVP +
Sbjct: 181 MQKFADLDSLGTKLKIKSAFAVDHMKGFVYIEAEKQYDINEACQGIPGIYVTRVAPVPNS 240
Query: 222 EVYHLFSVRKKSPDISEGMRARIKSGNYKGDLPQVAAVS---KKTTVKLIPRVDLQALAA 278
EVYHLFSVR ++P+ISEGM ARIK GNYKGDL QV +V+ KK TVKLIPR+DLQALAA
Sbjct: 241 EVYHLFSVRSRTPEISEGMWARIKGGNYKGDLAQVVSVNNTRKKVTVKLIPRIDLQALAA 300
Query: 279 KFGGGNSRQKTAIAAPRLISSSELDEFRPLIQLKRDRDTGKVFEVLDGMMFKDGFVYKKV 338
KFGGG SRQK A+ APRLISSSEL+EFRPLIQ+KRDRDTGKVFEVLDG+M KDG+VYKKV
Sbjct: 301 KFGGGYSRQKMAVPAPRLISSSELEEFRPLIQIKRDRDTGKVFEVLDGLMLKDGYVYKKV 360
Query: 339 SPDSLSLWGVVPTEEELLKFGTSENNESTDLEWLSQLYGDSKKKRVVRGADXXXXXXXXX 398
S DSLSLWGVVPTEEELLKFG ENNES DLEWLSQLYGD KKKRV+R
Sbjct: 361 SLDSLSLWGVVPTEEELLKFGPCENNESNDLEWLSQLYGDKKKKRVIRPDKGGGGKGESS 420
Query: 399 XXXXVVNGFELNDLVCFGKKDFGVIVSMDKEDCYKILKEGSDGPVAVTLERHQIKSGLFD 458
V NGFEL DLVCFGKKDFGVIV MDK+D YKILKEGSDGP AVT+ERH+IKSGLFD
Sbjct: 421 SGSGVGNGFELYDLVCFGKKDFGVIVGMDKDDIYKILKEGSDGPAAVTIERHEIKSGLFD 480
Query: 459 LKLTAQDRHSKTILVNDNVRVLEGPSKDKQGIVKHIYRGIVFLYNEIEEENCGYFTAKSS 518
LKLTA D+ SKTILVND VRVLEGPSK KQGIVKHIYRGIVFLY+ EEEN GY T KS+
Sbjct: 481 LKLTALDQQSKTILVNDTVRVLEGPSKGKQGIVKHIYRGIVFLYDGNEEENGGYLTCKSN 540
Query: 519 VCEKVKHGVADCIGKDGEPGPLIFEDPLEDPPTSPRSPLSLKKPWQARENNREFNRGDQD 578
+CEKV KD EP PL+FED +SPRSPLS KKPWQARENNREFNRGD +
Sbjct: 541 MCEKV---------KDSEPAPLVFEDQP----SSPRSPLSPKKPWQARENNREFNRGDNN 587
Query: 579 SLFAIGQTLRIRIGPLKGYLCRVIAIRRSDVTVKLDSQQKVLTVKSEHLSEVQGKXXXXX 638
++F+IGQTLRIRIGPLKGY+CRVIA+RR+DVTVKLDSQQKVLTVK EHLSEVQGK
Sbjct: 588 NMFSIGQTLRIRIGPLKGYICRVIALRRADVTVKLDSQQKVLTVKCEHLSEVQGKSTAIS 647
Query: 639 XXXXXXXXXLKPFDLLGTE 657
KPFDLLGTE
Sbjct: 648 SSGDPDSSSSKPFDLLGTE 666
>Glyma20g24910.1
Length = 929
Score = 310 bits (793), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 163/249 (65%), Positives = 188/249 (75%), Gaps = 8/249 (3%)
Query: 411 DLVCFGKKDFGVIVSMDKEDCYKILKEGSDGPVAVTLERHQIKSGLFDLKLTAQDRHSKT 470
+L KKDFGVIV MDK+D YKILKEGSDGP AVT++RH+IKSGLFDLKLTA D HSKT
Sbjct: 1 NLCHCSKKDFGVIVGMDKDDIYKILKEGSDGPDAVTVDRHEIKSGLFDLKLTALDLHSKT 60
Query: 471 ILVNDNVRVLEGPSK--DKQGIVKHIYRGIVFLYNEIEEENCGYFTAKSSVCEKVKHGVA 528
ILVND VRVLEGP+K + ++ G+ F E+ ++ T K+++CEKVK V
Sbjct: 61 ILVNDTVRVLEGPTKLWVNKALLSTFIEGLSFYMMEMRKKM--DLTCKTNMCEKVKLAVG 118
Query: 529 DCIGKDGEPGPLIFEDPLEDPPTSPRSPLSLKKPWQARENNREFNRGDQDSLFAIGQTLR 588
DC GKD EPGPL+FED +SPRSPLS KKPWQARENNREFNRGD +++F IGQTLR
Sbjct: 119 DCSGKDSEPGPLVFEDQP----SSPRSPLSPKKPWQARENNREFNRGDNNNMFTIGQTLR 174
Query: 589 IRIGPLKGYLCRVIAIRRSDVTVKLDSQQKVLTVKSEHLSEVQGKXXXXXXXXXXXXXXL 648
IRIGPLKGY+CRVIA+RR+DVTVKLDSQQKVLTVK EHLSEVQGK
Sbjct: 175 IRIGPLKGYICRVIALRRADVTVKLDSQQKVLTVKCEHLSEVQGKSTAISSSGDPDSSSS 234
Query: 649 KPFDLLGTE 657
KPFD+LGTE
Sbjct: 235 KPFDMLGTE 243
>Glyma06g12770.1
Length = 1039
Score = 197 bits (502), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 173/292 (59%), Gaps = 14/292 (4%)
Query: 100 EEFDRFLEERYAGGSKFSHFADEYDDKPMDPSSMHPGAKEVTPAIWKVKCTVGRERLSAF 159
E R ++ERY G + + + +E D ++ ++ P ++ P +W VKC +GRER +A
Sbjct: 148 EAMARSIQERY--GRRLTDYDEETTD--VEQQALLPSVRD--PKLWMVKCAIGRERETAV 201
Query: 160 CLMQKFADMKKLGTNLKLISAFAVDHMKGFVYMEADKQCDINEACKGLTGIYVTRVQPVP 219
CLMQK+ D G+ L++ SA A+DH+K ++Y+EADK+ + EACKGL I+ ++ VP
Sbjct: 202 CLMQKYIDK---GSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVP 258
Query: 220 PNEVYHLFSVRKKSPDISEGMRARIKSGNYKGDLPQVA---AVSKKTTVKLIPRVDLQAL 276
E+ + SV K+ D++ R+K G YKGDL +V V ++ TVKLIPR+DLQAL
Sbjct: 259 IREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQAL 318
Query: 277 AAKFGGGNSRQKTA-IAAPRLISSSELDEFRPLIQLKRDRDTGKVFEVLDGMMFKDGFVY 335
A K G +K A + PR ++ E E ++ +RD G+ F+ + GMMFKDGF+Y
Sbjct: 319 ANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDA-YGERFDAIGGMMFKDGFLY 377
Query: 336 KKVSPDSLSLWGVVPTEEELLKFGTSENNESTDLEWLSQLYGDSKKKRVVRG 387
K VS S+S + PT +EL KF + D+ LS L+ + KK ++G
Sbjct: 378 KTVSIKSISAQNIKPTFDELEKFRKPGESGDGDVASLSTLFANRKKGHFMKG 429
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 128/255 (50%), Gaps = 7/255 (2%)
Query: 375 LYGDSKKKRVVRGADXXXXXXXXXXXXXVVNGFELNDLVCFGKKDFGVIVSMDKEDCYKI 434
L D+ K+ + AD + +EL DLV FGVI+ ++ E +++
Sbjct: 508 LISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLDNNSFGVIIRVESE-AFQV 566
Query: 435 LKEGSDGPVAVTLERHQIKSGLFDLKLTAQDRHSKTILVNDNVRVLEGPSKDKQGIVKHI 494
LK D P V ++ +IK + D K++ QDR T+ D VR+++GP K KQG V+HI
Sbjct: 567 LKGIPDRPEVVLIKLREIKCKI-DKKISVQDRFKNTVSSKDVVRIVDGPCKGKQGPVEHI 625
Query: 495 YRGIVFLYNEIEEENCGYFTAKSSVCEKVKHGVADCIGKDGEPGPLIFEDPLEDPPTSPR 554
YRGI+F+++ E+ G+ AK+ C V G + G+ F L P P
Sbjct: 626 YRGILFIFDRHHLEHAGFICAKAQSCVVV--GGSRSSGERNGDAYSRFAS-LRSPSRIPP 682
Query: 555 SPLSLKKPWQARENNREFNRGDQDSLFAIGQTLRIRIGPLKGYLCRVIAIRRSDVTVKLD 614
SP + R DSL G T+++R GP KGY RVI ++ + V V+L+
Sbjct: 683 SPRRFSRGGPMDSGGRHRGGRGHDSL--AGTTVKVRQGPYKGYRGRVIDVKGTTVRVELE 740
Query: 615 SQQKVLTVKSEHLSE 629
SQ KV+TV H+S+
Sbjct: 741 SQMKVVTVDRNHISD 755
>Glyma04g42000.1
Length = 1038
Score = 197 bits (502), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 173/292 (59%), Gaps = 14/292 (4%)
Query: 100 EEFDRFLEERYAGGSKFSHFADEYDDKPMDPSSMHPGAKEVTPAIWKVKCTVGRERLSAF 159
E R ++ERY G + + + +E D ++ ++ P ++ P +W VKC +GRER +A
Sbjct: 159 EAMARSIQERY--GRRLTDYDEETTD--VEQQALLPSVRD--PKLWMVKCAIGRERETAV 212
Query: 160 CLMQKFADMKKLGTNLKLISAFAVDHMKGFVYMEADKQCDINEACKGLTGIYVTRVQPVP 219
CLMQK+ D G+ L++ SA A+DH+K ++Y+EADK+ + EACKGL I+ ++ VP
Sbjct: 213 CLMQKYIDK---GSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVP 269
Query: 220 PNEVYHLFSVRKKSPDISEGMRARIKSGNYKGDLPQVA---AVSKKTTVKLIPRVDLQAL 276
E+ + SV K+ D++ R+K G YKGDL +V V ++ TVKLIPR+DLQAL
Sbjct: 270 IREMTDVLSVESKAIDLARDTWVRLKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQAL 329
Query: 277 AAKFGGGNSRQKTA-IAAPRLISSSELDEFRPLIQLKRDRDTGKVFEVLDGMMFKDGFVY 335
A K G +K A + PR ++ E E ++ +RD G+ F+ + GMMFKDGF+Y
Sbjct: 330 ANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDA-YGERFDAIGGMMFKDGFLY 388
Query: 336 KKVSPDSLSLWGVVPTEEELLKFGTSENNESTDLEWLSQLYGDSKKKRVVRG 387
K VS S+S + PT +EL KF + D+ LS L+ + KK ++G
Sbjct: 389 KTVSIKSISAQNIKPTFDELEKFRKPGESGDGDVASLSTLFANRKKGHFMKG 440
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 7/226 (3%)
Query: 404 VNGFELNDLVCFGKKDFGVIVSMDKEDCYKILKEGSDGPVAVTLERHQIKSGLFDLKLTA 463
+ +EL DLV FGVI+ ++ E +++LK D P V ++ +IK + D K++
Sbjct: 536 IGDYELRDLVLLDNNSFGVIIRVESE-AFQVLKGIPDRPEVVLVKLREIKCKI-DKKISV 593
Query: 464 QDRHSKTILVNDNVRVLEGPSKDKQGIVKHIYRGIVFLYNEIEEENCGYFTAKSSVCEKV 523
QDR T+ D VR+++GP K KQG V+HIYRGI+F+++ E+ G+ AK+ C V
Sbjct: 594 QDRFKNTVSSKDVVRIIDGPCKGKQGPVEHIYRGILFIFDRHHLEHAGFICAKAQSC-VV 652
Query: 524 KHGVADCIGKDGEPGPLIFEDPLEDPPTSPRSPLSLKKPWQARENNREFNRGDQDSLFAI 583
G ++G+ L P P SP + R DSL
Sbjct: 653 VGGSRSSGDRNGDAYSRFAS--LRSPSRIPPSPRRFSRGGPMDSGGRHRGGRGHDSL--A 708
Query: 584 GQTLRIRIGPLKGYLCRVIAIRRSDVTVKLDSQQKVLTVKSEHLSE 629
G T+++R GP KGY RVI ++ + V V+L+SQ KV+TV H+S+
Sbjct: 709 GTTVKVRQGPYKGYRGRVIDVKGTTVRVELESQMKVVTVDRNHISD 754
>Glyma01g23700.1
Length = 175
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/56 (73%), Positives = 49/56 (87%)
Query: 434 ILKEGSDGPVAVTLERHQIKSGLFDLKLTAQDRHSKTILVNDNVRVLEGPSKDKQG 489
ILKE SDGP AVT+++H+ KSGLFDLKLTA D+H KTILVND VRVLEGP+K++ G
Sbjct: 46 ILKESSDGPDAVTIDQHETKSGLFDLKLTALDQHKKTILVNDIVRVLEGPTKEENG 101
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 36/45 (80%)
Query: 212 VTRVQPVPPNEVYHLFSVRKKSPDISEGMRARIKSGNYKGDLPQV 256
VTRV PVP +EVY+LFSVR ++P ISEGM ARIK GNYKG L +
Sbjct: 2 VTRVSPVPNSEVYNLFSVRSRTPKISEGMWARIKGGNYKGYLAHI 46
>Glyma07g34510.1
Length = 43
Score = 63.9 bits (154), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 155 RLSAFCLMQKFADMKKLGTNLKLISAFAVDHMKGFVYMEADK 196
RLSA CLMQKFAD+ LG+ LK+ S F VDHMKGFV +EA+K
Sbjct: 1 RLSALCLMQKFADLDLLGSKLKIKSTFVVDHMKGFVCIEAEK 42