Miyakogusa Predicted Gene

Lj5g3v2217190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2217190.1 tr|B9HS45|B9HS45_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_767606 PE=4
SV=1,42.31,3e-18,seg,NULL,CUFF.56939.1
         (130 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g42270.1                                                       157   4e-39

>Glyma10g42270.1 
          Length = 130

 Score =  157 bits (396), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 90/130 (69%), Gaps = 2/130 (1%)

Query: 1   MDSDPSVLFEAENDDDTFYAEIKRQILLLTSEDNEDLQETRDSNPFSVTKGGXXXXXXXX 60
           M+S P V+ EAE ++DTFYAEI+RQILLLTSEDNEDL ETR  NP +VT GG        
Sbjct: 3   MNSVPGVMSEAEYEEDTFYAEIRRQILLLTSEDNEDLLETRSFNPINVTNGG-SNRSAYS 61

Query: 61  XXXXXXXXXXXXLWETECSVSPPVWLVNLWGKGNKGTGVFIPQAACRKNQKPGGMNNRRR 120
                       LWE   S SPP+WLVNLW  G KGTGVFIPQ ACRKNQ+PG MNN RR
Sbjct: 62  FNCASPSASNFSLWERHSSGSPPLWLVNLWKNG-KGTGVFIPQVACRKNQRPGRMNNSRR 120

Query: 121 KIYRQVVNKD 130
           KIYR VVNKD
Sbjct: 121 KIYRPVVNKD 130